用几何深度学习模型,仅凭脑部MRI就能更准预测阿尔茨海默病风险。
Enhancing Alzheimer's Diagnosis: Leveraging Anatomical Landmarks in Graph Convolutional Neural Networks on Tetrahedral Meshes
- 基于四面体网格和解剖标志点构建Transformer架构,适应不同尺寸输入
- 在中等风险人群上实现脑淀粉样蛋白阳性预测,传统生物标志物无法区分
- 无需昂贵侵入性PET扫描,可提升早期诊断准确率
阿尔茨海默病(AD)是全球影响数百万的神经退行性疾病。脑淀粉样蛋白阳性是主要生物标志物,通常通过正电子发射断层扫描(PET)识别,但该方法成本高且具有侵入性。结构性磁共振成像(sMRI)提供了更安全便捷的替代方案。近年来,几何深度学习推动了sMRI分析与AD早期诊断。然而,在临床前期阶段,由于形态变化不显著,仍难以确定如脑淀粉样沉积等病理特征,导致现有分类模型在脑淀粉样蛋白阳性预测任务上泛化能力差。血清生物标志物(BBBMs)虽在预测脑淀粉样蛋白阳性方面表现优异,但在中等风险人群中仍需金标准检测(如淀粉样PET)进一步评估。受Transformer架构成功启发,我们提出一种基于Transformer的几何深度学习模型,具备对输入体积网格大小变化的可扩展性与鲁棒性。引入新型四面体网格标记化方案,融合由预训练高斯过程模型生成的解剖标志点。该模型在AD分类任务中表现优异,并首次证明其可泛化至中等风险人群的脑淀粉样蛋白阳性预测,而单一生物标志物无法有效区分。本工作有望推动几何深度学习发展,提升无需昂贵侵入性PET的AD诊断精度。
原文摘要 · Abstract (English)
Alzheimer's disease (AD) is a major neurodegenerative condition that affects millions around the world. As one of the main biomarkers in the AD diagnosis procedure, brain amyloid positivity is typically identified by positron emission tomography (PET), which is costly and invasive. Brain structural magnetic resonance imaging (sMRI) may provide a safer and more convenient solution for the AD diagnosis. Recent advances in geometric deep learning have facilitated sMRI analysis and early diagnosis of AD. However, determining AD pathology, such as brain amyloid deposition, in preclinical stage remains challenging, as less significant morphological changes can be observed. As a result, few AD classification models are generalizable to the brain amyloid positivity classification task. Blood-based biomarkers (BBBMs), on the other hand, have recently achieved remarkable success in predicting brain amyloid positivity and identifying individuals with high risk of being brain amyloid positive. However, individuals in medium risk group still require gold standard tests such as Amyloid PET for further evaluation. Inspired by the recent success of transformer architectures, we propose a geometric deep learning model based on transformer that is both scalable and robust to variations in input volumetric mesh size. Our work introduced a novel tokenization scheme for tetrahedral meshes, incorporating anatomical landmarks generated by a pre-trained Gaussian process model. Our model achieved superior classification performance in AD classification task. In addition, we showed that the model was also generalizable to the brain amyloid positivity prediction with individuals in the medium risk class, where BM alone cannot achieve a clear classification. Our work may enrich geometric deep learning research and improve AD diagnosis accuracy without using expensive and invasive PET scans.
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