用大模型自动分类脑部MRI报告并生成生长曲线,准确率超97%。
Language Models for Automated Classification of Brain MRI Reports and Growth Chart Generation
- 微调BERT等模型,基于4.4万份报告实现高精度分类
- 生成的生长曲线与人工标注高度一致(相关系数0.99)
- 适合医学影像分析、临床数据自动化研究者
临床脑部MRI及报告是宝贵资源,但因手动分析困难和数据异质性而未被充分利用。我们微调了BERT、BioBERT、ClinicalBERT和RadBERT等语言模型,在44,661份报告上实现了正常(有限病灶)与异常报告的自动分类。同时探索了Gemini 1.5-Pro在正常报告分类中的推理能力。通过自动化图像处理与建模,基于分类为正常的扫描生成脑部生长曲线,并与人工绘制曲线对比。微调模型取得优异性能(F1分数>97%),不平衡训练有效缓解类别不平衡问题,且在分布外数据上表现稳健;全文优于摘要部分。Gemini 1.5-Pro在结合临床推理时表现出色。模型生成的生长曲线与人工标注几乎完全一致(相关系数r = 0.99,p < 2.2e-16)。该方法可规模化分析放射科报告,支持大规模脑部MRI数据的自动化分类与定量特征基准生成。未来需进一步应对数据异质性并优化模型推理能力。
原文摘要 · Abstract (English)
Clinically acquired brain MRIs and radiology reports are valuable but underutilized resources due to the challenges of manual analysis and data heterogeneity. We developed fine-tuned language models (LMs) to classify brain MRI reports as normal (reports with limited pathology) or abnormal, fine-tuning BERT, BioBERT, ClinicalBERT, and RadBERT on 44,661 reports. We also explored the reasoning capabilities of a leading LM, Gemini 1.5-Pro, for normal report categorization. Automated image processing and modeling generated brain growth charts from LM-classified normal scans, comparing them to human-derived charts. Fine-tuned LMs achieved high classification performance (F1-Score >97%), with unbalanced training mitigating class imbalance. Performance was robust on out-of-distribution data, with full text outperforming summary (impression) sections. Gemini 1.5-Pro showed a promising categorization performance, especially with clinical inference. LM-derived brain growth charts were nearly identical to human-annotated charts (r = 0.99, p < 2.2e-16). Our LMs offer scalable analysis of radiology reports, enabling automated classification of brain MRIs in large datasets. One application is automated generation of brain growth charts for benchmarking quantitative image features. Further research is needed to address data heterogeneity and optimize LM reasoning.
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