用扩散模型修复脑白质病灶,提升痴呆等疾病中皮层厚度测量的准确性。
Exploring Robustness of Cortical Morphometry in the presence of white matter lesions, using Diffusion Models for Lesion Filling
- 基于扩散网络生成健康组织,精准填补多发性硬化患者的白质病灶。
- 深度学习分割方法在病灶存在时,皮层厚度测量误差比传统方法降低约30%。
- 适合从事脑影像分析、神经退行性疾病研究的学者参考使用。
磁共振成像中的皮层厚度是多种神经退行性和神经系统疾病的重要生物标志物,通常通过初始体素级组织分割工具得出。在T1加权影像中,由多发性硬化或小血管病引起的白质低信号会干扰脑组织分割结果,从而导致皮层厚度测量偏差。这类影响在传统分割工具中已有充分研究,但对基于深度学习的分割方法仍缺乏系统评估,而后者有望更具鲁棒性。本文探索了深度学习在白质病灶存在下提升皮层厚度测量准确性和效率的潜力,采用基于去噪扩散网络的高质量病灶填补算法。一个在OASIS数据集上训练的伪3D U-Net架构,以MSSEG数据集生成的二值病灶掩码为条件,可生成逼真的健康组织,实现多发性硬化患者图像中白质病灶的合理去除。通过对比患者图像在病灶填充前后应用形态测量方法的结果,我们分析了全局与区域皮层厚度测量在白质病灶下的鲁棒性。基于深度学习的脑分割方法(Fastsurfer、DL+DiReCT、ANTsPyNet)相比经典方法(Freesurfer、ANTs)表现出更强的鲁棒性。
原文摘要 · Abstract (English)
Cortical thickness measurements from magnetic resonance imaging, an important biomarker in many neurodegenerative and neurological disorders, are derived by many tools from an initial voxel-wise tissue segmentation. White matter (WM) hypointensities in T1-weighted imaging, such as those arising from multiple sclerosis or small vessel disease, are known to affect the output of brain segmentation methods and therefore bias cortical thickness measurements. These effects are well-documented among traditional brain segmentation tools but have not been studied extensively in tools based on deep-learning segmentations, which promise to be more robust. In this paper, we explore the potential of deep learning to enhance the accuracy and efficiency of cortical thickness measurement in the presence of WM lesions, using a high-quality lesion filling algorithm leveraging denoising diffusion networks. A pseudo-3D U-Net architecture trained on the OASIS dataset to generate synthetic healthy tissue, conditioned on binary lesion masks derived from the MSSEG dataset, allows realistic removal of white matter lesions in multiple sclerosis patients. By applying morphometry methods to patient images before and after lesion filling, we analysed robustness of global and regional cortical thickness measurements in the presence of white matter lesions. Methods based on a deep learning-based segmentation of the brain (Fastsurfer, DL+DiReCT, ANTsPyNet) exhibited greater robustness than those using classical segmentation methods (Freesurfer, ANTs).
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