arXiv:2503.21829eess.IVcs.CV2025-03被引 2

直接处理不同分辨率的MRI数据,提升多发性硬化病灶分割精度。

Learning from spatially inhomogenous data: resolution-adaptive convolutions for multiple sclerosis lesion segmentation

  • 采用球谐函数参数化卷积核,支持不同体素分辨率输入
  • 在3中心公开数据集与自建高异质数据上均优于传统U-Net
  • 无需重采样,避免插值失真,适合临床多源影像分析

临床影像中,不同厂商、医院和扫描序列导致图像数据空间异质性显著,特别是MRI的体素尺寸、切片间距和成像平面差异大。为应对这一问题,常规做法是将数据重采样至统一(通常为等体素)分辨率,但可能导致跨平面插值伪影和平面内下采样失真。本文提出一种基于e3nn框架的分割网络,采用球谐函数而非体素网格参数化卷积核,固定物理半径,可直接学习异质数据。该网络能根据输入体素尺寸自适应调整,无需预处理重采样。我们在三个中心的公开数据集及自建的多发性硬化高异质数据集上训练测试,对比了两种标准策略:直接训练(无重采样)与重采样至1mm等体素。结果表明,本方法在2D测试中全面超越经典U-Net,多数3D测试中也表现更优,且在未见分辨率上仍具强泛化能力。代码开源:http://github.com/SCAN-NRAD/e3nn_U-Net。

原文摘要 · Abstract (English)

In the setting of clinical imaging, differences in between vendors, hospitals and sequences can yield highly inhomogeneous imaging data. In MRI in particular, voxel dimension, slice spacing and acquisition plane can vary substantially. For clinical applications, therefore, algorithms must be trained to handle data with various voxel resolutions. The usual strategy to deal with heterogeneity of resolution is harmonization: resampling imaging data to a common (usually isovoxel) resolution. This can lead to loss of fidelity arising from interpolation artifacts out-of-plane and downsampling in-plane. We present in this paper a network architecture designed to be able to learn directly from spatially heterogeneous data, without resampling: a segmentation network based on the e3nn framework that leverages a spherical harmonic, rather than voxel-grid, parameterization of convolutional kernels, with a fixed physical radius. Networks based on these kernels can be resampled to their input voxel dimensions. We trained and tested our network on a publicly available dataset assembled from three centres, and on an in-house dataset of Multiple Sclerosis cases with a high degree of spatial inhomogeneity. We compared our approach to a standard U-Net with two strategies for handling inhomogeneous data: training directly on the data without resampling, and resampling to a common resolution of 1mm isovoxels. We show that our network is able to learn from various combinations of voxel sizes and outperforms classical U-Nets on 2D testing cases and most 3D testing cases. This shows an ability to generalize well when tested on image resolutions not seen during training. Our code can be found at: http://github.com/SCAN-NRAD/e3nn\_U-Net.

医学影像分割网络异质数据空间不变

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