arXiv:2503.22164q-bio.BMcs.AI2025-03被引 25

用大模型智能体构建虚拟药企,全流程自动化设计新药

PharmAgents: Building a Virtual Pharma with Large Language Model Agents

  • 多智能体协作模拟药物研发全链路
  • 自动生成候选药物并优化结合力与毒性等性质
  • 支持可解释性与自我进化,适合药物研发人员参考

小分子药物的发现仍是影响人类健康的重大科学挑战。传统药物研发流程复杂、耗时长且资源密集,需跨学科协作。近年来,以大语言模型(LLM)为代表的AI技术为加速这一过程提供了新机遇。本文提出PharmAgents,一个基于LLM驱动的多智能体协同虚拟药企系统。该系统通过集成可解释的智能体与专用机器学习模型及计算工具,模拟从靶点发现到临床前评估的完整药物研发流程。智能体间通过结构化知识交互与自动优化,实现潜在治疗靶点识别、先导化合物发现、结合亲和力与关键分子性质提升,并完成体外毒性与合成可行性分析。系统还具备可解释性、智能体交互与自我演化能力,可基于历史经验持续优化后续设计。本研究展示了LLM多智能体系统在药物发现中的潜力,建立了一种自主、可解释、可扩展的制药新范式,未来可延伸至药物全生命周期管理。

原文摘要 · Abstract (English)

The discovery of novel small molecule drugs remains a critical scientific challenge with far-reaching implications for treating diseases and advancing human health. Traditional drug development--especially for small molecule therapeutics--is a highly complex, resource-intensive, and time-consuming process that requires multidisciplinary collaboration. Recent breakthroughs in artificial intelligence (AI), particularly the rise of large language models (LLMs), present a transformative opportunity to streamline and accelerate this process. In this paper, we introduce PharmAgents, a virtual pharmaceutical ecosystem driven by LLM-based multi-agent collaboration. PharmAgents simulates the full drug discovery workflow--from target discovery to preclinical evaluation--by integrating explainable, LLM-driven agents equipped with specialized machine learning models and computational tools. Through structured knowledge exchange and automated optimization, PharmAgents identifies potential therapeutic targets, discovers promising lead compounds, enhances binding affinity and key molecular properties, and performs in silico analyses of toxicity and synthetic feasibility. Additionally, the system supports interpretability, agent interaction, and self-evolvement, enabling it to refine future drug designs based on prior experience. By showcasing the potential of LLM-powered multi-agent systems in drug discovery, this work establishes a new paradigm for autonomous, explainable, and scalable pharmaceutical research, with future extensions toward comprehensive drug lifecycle management.

药物发现大模型智能体

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