arXiv:2503.24345cs.CV2025-03被引 26

PathOrchestra是首个在100+临床任务上验证的病理学基础模型,可高效处理复杂病理图像。

PathOrchestra: A Comprehensive Foundation Model for Computational Pathology with Over 100 Diverse Clinical-Grade Tasks

  • 基于30万张病理切片的自监督学习,覆盖20种组织器官
  • 在112项临床任务中47项准确率超0.95,涵盖癌症分型与报告生成
  • 首次实现高发肠癌和复杂淋巴瘤的结构化报告生成,适合临床落地

高分辨率病理图像的复杂性与多样性给计算病理学带来巨大挑战。尽管基于AI的病理学基础模型已推动显著进展,但其开发需大规模数据集、大量存储与算力,且临床适用性与泛化能力需在广泛任务中严格验证。本文提出PathOrchestra,一个通过自监督学习训练的通用病理学基础模型,使用来自20种组织和器官、多个中心的30万张病理切片数据。该模型在112项临床任务中进行了严格评估,涵盖61个私有和51个公开数据集,包括数字切片预处理、泛癌分类、病灶识别、多癌种亚型分类、生物标志物评估、基因表达预测及结构化报告生成。在27,755张WSI和9,415,729个ROI上,该模型在47项任务中准确率超过0.950,包括多种器官的泛癌分类、淋巴瘤亚型诊断与膀胱癌筛查。尤为突出的是,它是首个能为高发病率结直肠癌及诊断复杂的淋巴瘤生成结构化报告的模型,这些领域此前少被基础模型覆盖,却具有巨大临床潜力。整体表明,大规模自监督病理学基础模型在多样化临床任务中具备可行性与有效性,其高精度与低标注依赖性使其具备临床整合前景,助力更高效高质量的医疗服务。

原文摘要 · Abstract (English)

The complexity and variability inherent in high-resolution pathological images present significant challenges in computational pathology. While pathology foundation models leveraging AI have catalyzed transformative advancements, their development demands large-scale datasets, considerable storage capacity, and substantial computational resources. Furthermore, ensuring their clinical applicability and generalizability requires rigorous validation across a broad spectrum of clinical tasks. Here, we present PathOrchestra, a versatile pathology foundation model trained via self-supervised learning on a dataset comprising 300K pathological slides from 20 tissue and organ types across multiple centers. The model was rigorously evaluated on 112 clinical tasks using a combination of 61 private and 51 public datasets. These tasks encompass digital slide preprocessing, pan-cancer classification, lesion identification, multi-cancer subtype classification, biomarker assessment, gene expression prediction, and the generation of structured reports. PathOrchestra demonstrated exceptional performance across 27,755 WSIs and 9,415,729 ROIs, achieving over 0.950 accuracy in 47 tasks, including pan-cancer classification across various organs, lymphoma subtype diagnosis, and bladder cancer screening. Notably, it is the first model to generate structured reports for high-incidence colorectal cancer and diagnostically complex lymphoma-areas that are infrequently addressed by foundational models but hold immense clinical potential. Overall, PathOrchestra exemplifies the feasibility and efficacy of a large-scale, self-supervised pathology foundation model, validated across a broad range of clinical-grade tasks. Its high accuracy and reduced reliance on extensive data annotation underline its potential for clinical integration, offering a pathway toward more efficient and high-quality medical services.

病理学基础模型自监督结构化报告

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