用机器学习解析蛋白肽自组装的二维小角散射数据,揭示传统方法忽略的复杂结构。
CREASE-2D Analysis of Small Angle X-ray Scattering Data from Supramolecular Dipeptide Systems
- 基于机器学习的CREASE-2D方法分析完整二维散射图谱
- 可识别管状结构、偏心度、取向有序度等新特征
- 适用于研究不同化学环境下的自组装行为
本文将近期提出的基于机器学习的CREASE-2D方法扩展至分析超分子二肽胶束体系的小角X射线散射(SAXS)二维散射图谱。传统分析依赖近似或错误的解析模型拟合方位平均的一维散射数据,易遗漏各向异性结构信息。利用CREASE-2D分析二维散射轮廓,可同时揭示水溶液中二肽自组装体系的各向同性和各向异性结构特征,包括现有模型无法识别的结构要素(如组装管、截面偏心度、弯曲度、取向有序性)。该方法输出的优化结构特征分布,结合对应的三维实空间结构可视化,使我们能系统表征组装管形状随二肽化学结构、溶剂/盐浓度及组分比例的变化规律。本工作展示了对完整SAXS图谱进行CREASE-2D分析,为理解以往一维拟合无法获得的复杂结构排列提供了前所未有的精度。
原文摘要 · Abstract (English)
In this paper, we extend a recently developed machine-learning (ML) based CREASE-2D method to analyze the entire two-dimensional (2D) scattering pattern obtained from small angle X-ray scattering measurements of supramolecular dipeptide micellar systems. Traditional analysis of such scattering data would involve use of approximate or incorrect analytical models to fit to azimuthally-averaged 1D scattering patterns that can miss the anisotropic arrangements. Analysis of the 2D scattering profiles of such micellar solutions using CREASE-2D allows us to understand both isotropic and anisotropic structural arrangements that are present in these systems of assembled dipeptides in water and in the presence of added solvents/salts. CREASE-2D outputs distributions of relevant structural features including ones that cannot be identified with existing analytical models (e.g., assembled tubes, cross-sectional eccentricity, tortuosity, orientational order). The representative three-dimensional (3D) real-space structures for the optimized values of these structural features further facilitate visualization of the structures. Through this detailed interpretation of these 2D SAXS profiles we are able to characterize the shapes of the assembled tube structures as a function of dipeptide chemistry, solution conditions with varying salts and solvents, and relative concentrations of all components. This paper demonstrates how CREASE-2D analysis of entire SAXS profiles can provide an unprecedented level of understanding of structural arrangements which has not been possible through traditional analytical model fits to the 1D SAXS data.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。