arXiv:2504.11519physics.med-phcs.CV2025-04被引 6

用基础模型提升癌症手术边缘检测准确率,解决样本少难题。

FACT: Foundation Model for Assessing Cancer Tissue Margins with Mass Spectrometry

  • 将文本音频模型改造为医学质谱数据基础模型,用三元组对比学习预训练。
  • 在有限标注数据下达到82.4%的AUROC,超越自监督与半监督基线。
  • 适合临床数据稀缺场景,可推动术中实时肿瘤边缘评估应用。

精准判断癌症手术中的组织边缘对确保肿瘤完整切除至关重要。快速蒸发电离质谱(REIMS)能实现术中实时边缘评估,生成的质谱数据需依赖机器学习模型支持临床决策。然而,手术环境中标注数据稀缺,构成重大挑战。本研究首次针对REIMS数据开发专用基础模型,突破此限制,推进实时术中边缘评估。我们提出FACT模型,基于原用于文本-音频关联的基础模型,采用新提出的监督对比学习方法(基于三元组损失)进行预训练。通过消融实验对比不同模型与预训练方法。结果表明,所提模型显著提升分类性能,达到82.4% ± 0.8的AUROC,优于自监督与半监督基线及其它模型。研究证明,经新方法适配与预训练的基础模型,即使在标注样本极少的情况下,仍可有效分类REIMS数据。这验证了基础模型在数据稀缺临床环境下的可行性,有助于提升术中实时边缘评估能力。

原文摘要 · Abstract (English)

Purpose: Accurately classifying tissue margins during cancer surgeries is crucial for ensuring complete tumor removal. Rapid Evaporative Ionization Mass Spectrometry (REIMS), a tool for real-time intraoperative margin assessment, generates spectra that require machine learning models to support clinical decision-making. However, the scarcity of labeled data in surgical contexts presents a significant challenge. This study is the first to develop a foundation model tailored specifically for REIMS data, addressing this limitation and advancing real-time surgical margin assessment. Methods: We propose FACT, a Foundation model for Assessing Cancer Tissue margins. FACT is an adaptation of a foundation model originally designed for text-audio association, pretrained using our proposed supervised contrastive approach based on triplet loss. An ablation study is performed to compare our proposed model against other models and pretraining methods. Results: Our proposed model significantly improves the classification performance, achieving state-of-the-art performance with an AUROC of $82.4\% \pm 0.8$. The results demonstrate the advantage of our proposed pretraining method and selected backbone over the self-supervised and semi-supervised baselines and alternative models. Conclusion: Our findings demonstrate that foundation models, adapted and pretrained using our novel approach, can effectively classify REIMS data even with limited labeled examples. This highlights the viability of foundation models for enhancing real-time surgical margin assessment, particularly in data-scarce clinical environments.

癌症诊断质谱分析基础模型

Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。