用图小波与对比学习提升药物靶点预测的准确性与可解释性
Heterogeneous network drug-target interaction prediction model based on graph wavelet transform and multi-level contrastive learning
- 融合异构图卷积与多尺度信号分解,实现局部全局特征协同感知
- 在多个数据集上达到领先性能,提升预测鲁棒性与可解释性
- 适合生物信息学与药物研发领域研究者参考使用
药物-靶点相互作用(DTI)预测是生物医药与精准医疗的核心任务。传统机器学习方法常存在黑箱问题,难以揭示模型决策机制与分子间作用模式的深层关联。本文提出一种基于图小波变换与多层次对比学习的异构网络DTI预测框架,结合图神经网络与多尺度信号处理技术,构建兼具高效预测能力与多层次可解释性的模型。技术突破体现在三方面:1)基于异构图卷积网络(HGCN)设计多阶邻居聚合策略,实现局部-全局特征协同感知;2)提出深度分层节点特征变换(GWT)架构,实现多尺度图信号分解与生物学可解释性;3)通过跨维度、层次化表示的对比学习,对齐并融合HGCN与GWT的节点表征,整合多维信息以增强预测鲁棒性。实验表明,该框架在所有测试数据集上均表现优异。本研究为从黑箱预测到机制解码的药物靶点发现提供了完整解决方案,其方法论对复杂生物分子互作系统的建模具有重要参考价值。
原文摘要 · Abstract (English)
Drug-target interaction (DTI) prediction is a core task in drug development and precision medicine in the biomedical field. However, traditional machine learning methods generally have the black box problem, which makes it difficult to reveal the deep correlation between the model decision mechanism and the interaction pattern between biological molecules. This study proposes a heterogeneous network drug target interaction prediction framework, integrating graph neural network and multi scale signal processing technology to construct a model with both efficient prediction and multi level interpretability. Its technical breakthroughs are mainly reflected in the following three dimensions:Local global feature collaborative perception module. Based on heterogeneous graph convolutional neural network (HGCN), a multi order neighbor aggregation strategy is designed.Multi scale graph signal decomposition and biological interpretation module. A deep hierarchical node feature transform (GWT) architecture is proposed.Contrastive learning combining multi dimensional perspectives and hierarchical representations. By comparing the learning models, the node representations from the two perspectives of HGCN and GWT are aligned and fused, so that the model can integrate multi dimensional information and improve the prediction robustness. Experimental results show that our framework shows excellent prediction performance on all datasets. This study provides a complete solution for drug target discovery from black box prediction to mechanism decoding, and its methodology has important reference value for modeling complex biomolecular interaction systems.
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