用增强版SELFIES提升分子属性预测,显著改善副作用识别效果
Evaluating Effects of Augmented SELFIES for Molecular Understanding Using QK-LSTM
- 将增强的SELFIES编码输入量子-经典LSTM模型,捕捉分子序列复杂模式
- 相比SMILES,经典与混合量子模型分别提升5.97%和5.91%准确率
- 首次验证增强型SELFIES在量子与混合框架中的优势,适合药物研发者
识别分子属性(包括副作用)是药物开发中关键但耗时的步骤。未能在监管提交前发现副作用可能导致重大财务损失和生产延迟,而在审查阶段遗漏则可能造成灾难性后果。这为创新机器学习方法提供了机会,特别是量子核-长短期记忆(QK-LSTM)等混合量子-经典模型。QK-LSTM将量子核函数融入经典LSTM框架,能捕捉序列数据中的复杂非线性模式。通过将输入数据映射到高维量子特征空间,该模型减少对大参数集的需求,实现模型压缩而不牺牲序列任务的准确性。尽管经典领域已使用增强版简化分子线性输入系统(SMILES),但据我们所知,尚无研究探索增强型SMILES在量子领域的影响,也未研究增强型自引用嵌入字符串(SELFIES)在经典或混合量子-经典设置中的作用。本研究首次分析这些方法,为提升分子属性预测与副作用识别提供新见解。结果表明,使用增强型SELFIES相比SMILES,在经典域提升5.97%,在混合量子-经典域提升5.91%,均具统计显著性。
原文摘要 · Abstract (English)
Identifying molecular properties, including side effects, is a critical yet time-consuming step in drug development. Failing to detect these side effects before regulatory submission can result in significant financial losses and production delays, and overlooking them during the regulatory review can lead to catastrophic consequences. This challenge presents an opportunity for innovative machine learning approaches, particularly hybrid quantum-classical models like the Quantum Kernel-Based Long Short-Term Memory (QK-LSTM) network. The QK-LSTM integrates quantum kernel functions into the classical LSTM framework, enabling the capture of complex, non-linear patterns in sequential data. By mapping input data into a high-dimensional quantum feature space, the QK-LSTM model reduces the need for large parameter sets, allowing for model compression without sacrificing accuracy in sequence-based tasks. Recent advancements have been made in the classical domain using augmented variations of the Simplified Molecular Line-Entry System (SMILES). However, to the best of our knowledge, no research has explored the impact of augmented SMILES in the quantum domain, nor the role of augmented Self-Referencing Embedded Strings (SELFIES) in either classical or hybrid quantum-classical settings. This study presents the first analysis of these approaches, providing novel insights into their potential for enhancing molecular property prediction and side effect identification. Results reveal that augmenting SELFIES yields in statistically significant improvements from SMILES by a 5.97% improvement for the classical domain and a 5.91% improvement for the hybrid quantum-classical domain.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。