arXiv:2505.03387cs.LG2025-05中稿 · the 47th Annual In…被引 2

融合特征选择与数据生成,提升小样本组学分类的准确与可解释性

Improving Omics-Based Classification: The Role of Feature Selection and Synthetic Data Generation

  • 结合特征选择与数据增强,构建可解释的分类框架
  • 在小样本数据上实现稳定跨验证性能,泛化能力更强
  • 适合临床组学研究者提升模型可靠性与可复现性

随着组学数据复杂度增加,如何在提升分类性能的同时增强模型决策的透明性与可靠性成为关键挑战。高维组学数据常因临床限制、患者条件或表型罕见导致样本量有限。现有组学分类模型普遍存在解释性不足的问题,影响可信度与可重复性。本研究提出一种集成特征选择与数据增强的机器学习分类框架,在公开数据集EMTAB 8026上,通过六种二分类场景的自举分析评估模型表现。结果表明,该方法在小样本下仍能保持稳定的交叉验证性能,并在更大测试集上表现一致。研究强调了准确性与特征选择间的平衡,证实合成数据有助于提升泛化能力,即使在极低样本条件下亦有效。

原文摘要 · Abstract (English)

Given the increasing complexity of omics datasets, a key challenge is not only improving classification performance but also enhancing the transparency and reliability of model decisions. Effective model performance and feature selection are fundamental for explainability and reliability. In many cases, high dimensional omics datasets suffer from limited number of samples due to clinical constraints, patient conditions, phenotypes rarity and others conditions. Current omics based classification models often suffer from narrow interpretability, making it difficult to discern meaningful insights where trust and reproducibility are critical. This study presents a machine learning based classification framework that integrates feature selection with data augmentation techniques to achieve high standard classification accuracy while ensuring better interpretability. Using the publicly available dataset (E MTAB 8026), we explore a bootstrap analysis in six binary classification scenarios to evaluate the proposed model's behaviour. We show that the proposed pipeline yields cross validated perfomance on small dataset that is conserved when the trained classifier is applied to a larger test set. Our findings emphasize the fundamental balance between accuracy and feature selection, highlighting the positive effect of introducing synthetic data for better generalization, even in scenarios with very limited samples availability.

组学分类特征选择数据增强小样本

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