arXiv:2505.15488eess.IVcs.LG2025-05

用深度学习自动推断大鼠心脏动态PET的血浆输入函数,提升精度。

Machine Learning Derived Blood Input for Dynamic PET Images of Rat Heart

  • 用LSTM网络结合心肌和血池信号,自动预测血浆输入函数
  • 相比传统方法,均方误差降低56.4%,显著提升精度
  • 适合做动物实验代谢研究的团队,尤其关注心功能评估

对52只大鼠(26只对照Wistar-Kyoto鼠和26只自发性高血压鼠)在1、2、3、5、9、12和18个月龄时,使用Siemens microPET和Albira三模态扫描仪进行纵向动态FDG PET成像。针对大鼠心脏动态FDG PET图像,构建了一个包含15个参数的双输出模型,通过峰值拟合代价函数校正溢出污染与部分体积效应,实现模型修正血浆输入函数(MCIF)与动力学速率常数的同步估计。该模型主要缺点在于依赖人工标注用于图像衍生输入函数(IDIF)及关键模型参数的人工设定。为克服此问题,采用半自动分割技术,并设计长短期记忆(LSTM)神经网络,利用拼接后的IDIF与心肌输入数据训练并预测测试数据中的MCIF,与参考建模的MCIF进行对比。通过二维切片上双阈值分割法(T1为高亮心肌,T2为低亮环状区域)确定左室血池区域。所得的IDIF与心肌时间活度曲线(TAC)用于计算所有数据集的参考(建模)MCIF。分割后的IDIF与心肌信号作为LSTM网络输入。采用33:8:11划分的5折交叉验证结构训练并评估模型性能。为缓解时间步增多带来的数据稀疏问题,引入中点插值法提高时间点密度(超过10分钟)。使用中点插值的模型相比先前均方误差(MSE)提升56.4%。

原文摘要 · Abstract (English)

Dynamic FDG PET imaging study of n = 52 rats including 26 control Wistar-Kyoto (WKY) rats and 26 experimental spontaneously hypertensive rats (SHR) were performed using a Siemens microPET and Albira trimodal scanner longitudinally at 1, 2, 3, 5, 9, 12 and 18 months of age. A 15-parameter dual output model correcting for spill over contamination and partial volume effects with peak fitting cost functions was developed for simultaneous estimation of model corrected blood input function (MCIF) and kinetic rate constants for dynamic FDG PET images of rat heart in vivo. Major drawbacks of this model are its dependence on manual annotations for the Image Derived Input Function (IDIF) and manual determination of crucial model parameters to compute MCIF. To overcome these limitations, we performed semi-automated segmentation and then formulated a Long-Short-Term Memory (LSTM) cell network to train and predict MCIF in test data using a concatenation of IDIFs and myocardial inputs and compared them with reference-modeled MCIF. Thresholding along 2D plane slices with two thresholds, with T1 representing high-intensity myocardium, and T2 representing lower-intensity rings, was used to segment the area of the LV blood pool. The resultant IDIF and myocardial TACs were used to compute the corresponding reference (model) MCIF for all data sets. The segmented IDIF and the myocardium formed the input for the LSTM network. A k-fold cross validation structure with a 33:8:11 split and 5 folds was utilized to create the model and evaluate the performance of the LSTM network for all datasets. To overcome the sparseness of data as time steps increase, midpoint interpolation was utilized to increase the density of datapoints beyond time = 10 minutes. The model utilizing midpoint interpolation was able to achieve a 56.4% improvement over previous Mean Squared Error (MSE).

PET成像深度学习血浆输入函数动物实验

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