arXiv:2505.15632eess.IV2025-05被引 1

将渐进式图像压缩与随机访问结合,降低DNA存储读取成本。

Combining Progressive Image Compression and Random Access in DNA Data Storage

  • 基于JPEG2000设计可随机访问的编码器,支持从混合池中精准提取单张图像。
  • 读取时可动态调整精度与成本,用户按需控制解码质量与开销。
  • 适用于需要长期保存且频繁检索图像数据的DNA存储场景。

存储需求的指数级增长与存储设备寿命短的问题,使长期数据归档成为关键瓶颈。合成DNA具有高密度、长寿命和低能耗的特点,是理想的长期数据存档介质。然而,当前DNA存储技术面临写入成本高、读写易出错等挑战,因此数据压缩与纠错至关重要。此外,多个文件的DNA分子常被共同存储于同一寡核苷酸池中,若无随机访问机制,解码特定文件需先测序所有分子,显著增加读取成本。本文提出PIC-DNA——一种基于JPEG2000的渐进式图像编码器,直接集成随机访问功能,可在包含多张图像的寡核苷酸池中高效提取指定图像。其渐进解码器可根据用户对成本与质量的需求动态调整读取策略,显著降低读取开销。

原文摘要 · Abstract (English)

The exponential increase in storage demand and low lifespan of data storage devices has resulted in long-term archival and preservation emerging as a critical bottlenecks in data storage. In order to meet this demand, researchers are now investigating novel forms of data storage media. The high density, long lifespan and low energy needs of synthetic DNA make it a promising candidate for long-term data archival. However, current DNA data storage technologies are facing challenges with respect to cost (writing data to DNA is expensive) and reliability (reading and writing data is error prone). Thus, data compression and error correction are crucial to scale DNA storage. Additionally, the DNA molecules encoding several files are very often stored in the same place, called an oligo pool. For this reason, without random access solutions, it is relatively impractical to decode a specific file from the pool, because all the oligos from all the files need to first be sequenced, which greatly deteriorates the read cost. This paper introduces PIC-DNA - a novel JPEG2000-based progressive image coder adapted to DNA data storage. This coder directly includes a random access process in its coding system, allowing for the retrieval of a specific image from a pool of oligos encoding several images. The progressive decoder can dynamically adapt the read cost according to the user's cost and quality constraints at decoding time. Both the random access and progressive decoding greatly improve on the read-cost of image coders adapted to DNA.

DNA存储图像压缩随机访问渐进解码

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