用深度学习精准追踪鼠眼,解决毛发多、尺寸小等挑战
A System for Accurate Tracking and Video Recordings of Rodent Eye Movements using Convolutional Neural Networks for Biomedical Image Segmentation
- 基于卷积神经网络实现鼠眼瞳孔与反光点分割
- 可增量训练适应野外实验中眼球参数差异
- 适合神经科学与视觉研究中鼠类眼动追踪
神经科学与视觉科学研究依赖对动物注视方向的精确测量。啮齿类动物因经济优势和耐受性强,是该领域最广泛使用的实验对象。近年来,基于视频的眼动追踪技术因其非侵入性和易用性成为主流。然而,现有算法大多针对人眼设计,未考虑鼠眼的独特特征:如眼参数变化大、周围毛发多、体型小等。本文提出一种灵活、鲁棒且高精度的鼠眼瞳孔与角膜反光识别模型,支持增量训练以适应实际应用中的参数变异。据我们所知,这是首个将生物医学图像分割的卷积神经网络架构应用于鼠眼追踪的论文。结合自动化红外视频记录系统,该方法实现了啮齿类眼动追踪的最新技术水平。
原文摘要 · Abstract (English)
Research in neuroscience and vision science relies heavily on careful measurements of animal subject's gaze direction. Rodents are the most widely studied animal subjects for such research because of their economic advantage and hardiness. Recently, video based eye trackers that use image processing techniques have become a popular option for gaze tracking because they are easy to use and are completely noninvasive. Although significant progress has been made in improving the accuracy and robustness of eye tracking algorithms, unfortunately, almost all of the techniques have focused on human eyes, which does not account for the unique characteristics of the rodent eye images, e.g., variability in eye parameters, abundance of surrounding hair, and their small size. To overcome these unique challenges, this work presents a flexible, robust, and highly accurate model for pupil and corneal reflection identification in rodent gaze determination that can be incrementally trained to account for variability in eye parameters encountered in the field. To the best of our knowledge, this is the first paper that demonstrates a highly accurate and practical biomedical image segmentation based convolutional neural network architecture for pupil and corneal reflection identification in eye images. This new method, in conjunction with our automated infrared videobased eye recording system, offers the state of the art technology in eye tracking for neuroscience and vision science research for rodents.
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