Transformer模型提升前列腺分割精度,尤其在数据差异大时更稳定。
Improving Prostate Gland Segmentation Using Transformer based Architectures
- 用SwinUNETR的全局与移位窗口自注意力机制减少标注噪声和类别不平衡影响。
- 在跨读者、跨中心数据下,最高达0.902的Dice分数,比传统CNN高5个百分点。
- 适合医疗影像领域需高鲁棒性的临床部署场景。
读者间差异和跨站点域偏移使基于T2加权MRI图像的前列腺解剖自动分割面临挑战。本研究探讨变压器模型是否能在此类异质性中保持精度。对比了UNETR和SwinUNETR在前列腺腺体分割上的表现,以546例经两名独立专家标注的T2加权MRI体积为基准,分析三种训练策略:单队列数据集、五折交叉验证混合队列、按腺体大小划分的数据集。通过Optuna优化超参数。测试集来自独立读者群体,作为评估终点(骰子相似系数)。单读者训练中,SwinUNETR对读者#1平均得分0.816,读者#2为0.860;UNETR分别为0.800和0.833,优于基线3D UNet(读者#1: 0.825,读者#2: 0.851)。交叉验证混合训练下,SwinUNETR平均得分0.8583(读者#1)和0.867(读者#2)。在腺体大小分组数据集中,使用五折混合策略,对读者#1(n=53)、读者#2(n=87)的大腺体子集,SwinUNETR分别达到0.902和0.894,而UNETR表现较差。结果表明,全局与移位窗口自注意力有效降低标签噪声与类别不平衡敏感性,使骰子分数相比CNN提升最多5个百分点,同时保持计算效率,增强SwinUNETR在临床部署中的鲁棒性。
原文摘要 · Abstract (English)
Inter reader variability and cross site domain shift challenge the automatic segmentation of prostate anatomy using T2 weighted MRI images. This study investigates whether transformer models can retain precision amid such heterogeneity. We compare the performance of UNETR and SwinUNETR in prostate gland segmentation against our previous 3D UNet model [1], based on 546 MRI (T2weighted) volumes annotated by two independent experts. Three training strategies were analyzed: single cohort dataset, 5 fold cross validated mixed cohort, and gland size based dataset. Hyperparameters were tuned by Optuna. The test set, from an independent population of readers, served as the evaluation endpoint (Dice Similarity Coefficient). In single reader training, SwinUNETR achieved an average dice score of 0.816 for Reader#1 and 0.860 for Reader#2, while UNETR scored 0.8 and 0.833 for Readers #1 and #2, respectively, compared to the baseline UNets 0.825 for Reader #1 and 0.851 for Reader #2. SwinUNETR had an average dice score of 0.8583 for Reader#1 and 0.867 for Reader#2 in cross-validated mixed training. For the gland size-based dataset, SwinUNETR achieved an average dice score of 0.902 for Reader#1 subset and 0.894 for Reader#2, using the five-fold mixed training strategy (Reader#1, n=53; Reader#2, n=87) at larger gland size-based subsets, where UNETR performed poorly. Our findings demonstrate that global and shifted-window self-attention effectively reduces label noise and class imbalance sensitivity, resulting in improvements in the Dice score over CNNs by up to five points while maintaining computational efficiency. This contributes to the high robustness of SwinUNETR for clinical deployment.
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