arXiv:2506.21444cs.CV2025-06中稿 · publication at the…被引 10

用跨数据集评估,验证了大模型可有效识别癌细胞分裂异常

Benchmarking Deep Learning and Vision Foundation Models for Atypical vs. Normal Mitosis Classification with Cross-Dataset Evaluation

  • 对比了端到端模型、基础模型微调等三种方法
  • 在跨数据集测试中最高达到81.35%的平衡准确率
  • 适合病理分析与医学图像智能诊断研究者参考

异常有丝分裂是细胞分裂过程中的异常表现,已被证实是肿瘤恶性程度的独立预后标志。但由于其发生率低、形态差异细微、病理科医生间判断一致性差以及数据集类别不平衡,异常有丝分裂分类仍具挑战。基于乳腺癌异常有丝分裂数据集(AMi-Br),本研究全面基准比较了深度学习方法在自动识别异常有丝分裂(AMF)方面的表现,包括端到端训练的深度模型、线性探测的基础模型,以及使用低秩适配(LoRA)微调的基础模型。为实现严谨评估,我们新增两个独立测试集:来自TCGA乳腺癌队列的AtNorM-Br,以及来自MIDOG++训练集子集的多领域数据集AtNorM-MD。在域内数据集AMi-Br上,平均平衡准确率达到0.8135;在域外数据集AtNorm-Br和AtNorM-MD上分别为0.7788和0.7723。结果表明,尽管该任务极具挑战性,但借助迁移学习与模型微调技术仍可有效解决。所有代码与数据已开源:https://github.com/DeepMicroscopy/AMi-Br_Benchmark。

原文摘要 · Abstract (English)

Atypical mitosis marks a deviation in the cell division process that has been shown be an independent prognostic marker for tumor malignancy. However, atypical mitosis classification remains challenging due to low prevalence, at times subtle morphological differences from normal mitotic figures, low inter-rater agreement among pathologists, and class imbalance in datasets. Building on the Atypical Mitosis dataset for Breast Cancer (AMi-Br), this study presents a comprehensive benchmark comparing deep learning approaches for automated atypical mitotic figure (AMF) classification, including end-to-end trained deep learning models, foundation models with linear probing, and foundation models fine-tuned with low-rank adaptation (LoRA). For rigorous evaluation, we further introduce two new held-out AMF datasets - AtNorM-Br, a dataset of mitotic figures from the TCGA breast cancer cohort, and AtNorM-MD, a multi-domain dataset of mitotic figures from a subset of the MIDOG++ training set. We found average balanced accuracy values of up to 0.8135, 0.7788, and 0.7723 on the in-domain AMi-Br and the out-of-domain AtNorm-Br and AtNorM-MD datasets, respectively. Our work shows that atypical mitotic figure classification, while being a challenging problem, can be effectively addressed through the use of recent advances in transfer learning and model fine-tuning techniques. We make all code and data used in this paper available in this github repository: https://github.com/DeepMicroscopy/AMi-Br_Benchmark.

医学图像异常检测大模型病理分析

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