arXiv:2507.00292cs.CVcs.AI2025-07被引 1

提出融合策略降低病理图像分类中MIL方法的性能波动。

Reducing Variability of Multiple Instance Learning Methods for Digital Pathology

  • 用多保真度模型融合,通过验证分数筛选稳定模型并平均
  • 实验显示可将性能波动缩小至10-15个AUC点以内
  • 适用于任意MIL模型,提升复现性且不增加计算开销

数字病理学通过将组织样本数字化为全切片图像(WSIs)推动了医学影像分析的发展。然而,高分辨率和大尺寸的WSIs给深度学习模型应用带来挑战。为此,常将每张幻灯片划分为多个图像块,并赋予整体诊断标签,而非逐像素标注。将每张幻灯片视为图像块集合,多重实例学习(MIL)方法成为解决此类分类任务的有效方案。但当前MIL方法在不同运行间表现差异显著,测试集上AUC波动可达10-15点,影响方法间的可靠比较。该波动主要源于权重初始化、批次打乱顺序和学习率设置。本文提出一种多保真度模型融合策略:先对多个模型进行少量训练,基于验证分数筛选出最稳定且表现优异的模型并取平均。该方法可适配任意现有MIL模型,在超过2000次实验中于两个数据集上验证其有效性,涵盖3种初始化策略与5种MIL方法。结果表明,该策略显著降低性能变异性,简化超参数调优,提升可复现性,同时保持高效计算。

原文摘要 · Abstract (English)

Digital pathology has revolutionized the field by enabling the digitization of tissue samples into whole slide images (WSIs). However, the high resolution and large size of WSIs present significant challenges when it comes to applying Deep Learning models. As a solution, WSIs are often divided into smaller patches with a global label (\textit{i.e., diagnostic}) per slide, instead of a (too) costly pixel-wise annotation. By treating each slide as a bag of patches, Multiple Instance Learning (MIL) methods have emerged as a suitable solution for WSI classification. A major drawback of MIL methods is their high variability in performance across different runs, which can reach up to 10-15 AUC points on the test set, making it difficult to compare different MIL methods reliably. This variability mainly comes from three factors: i) weight initialization, ii) batch (shuffling) ordering, iii) and learning rate. To address that, we introduce a Multi-Fidelity, Model Fusion strategy for MIL methods. We first train multiple models for a few epochs and average the most stable and promising ones based on validation scores. This approach can be applied to any existing MIL model to reduce performance variability. It also simplifies hyperparameter tuning and improves reproducibility while maintaining computational efficiency. We extensively validate our approach on WSI classification tasks using 2 different datasets, 3 initialization strategies and 5 MIL methods, for a total of more than 2000 experiments.

数字病理MIL模型融合可复现性

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