arXiv:2507.05540cs.LGcs.AI2025-07

用外部干净链接约束隐空间,提升噪声图上的模型性能

Robust Learning on Noisy Graphs via Latent Space Constraints with External Knowledge

  • 用外部清洁边与去噪图双编码器约束隐空间
  • 在中等噪声图上优于标准及抗噪GNN模型
  • 适合关系数据含噪声的场景,提升可解释性

图神经网络在存在噪声边时表现不佳。本文提出隐空间约束图神经网络(LSC-GNN),利用外部提供的‘干净’边来引导有噪声目标图的嵌入表示。训练两个编码器:一个在包含外部边的完整图上训练,另一个在排除目标图潜在噪声边的正则化图上训练,通过惩罚两者隐空间表示的差异,使模型避免过拟合虚假边。在基准数据集上的实验表明,当图存在中等程度噪声时,LSC-GNN优于标准及抗噪型GNN。我们还将该方法扩展至异质图,在小规模蛋白质-代谢物网络上验证,其中代谢物-蛋白质相互作用有效降低了蛋白质共现数据中的噪声。结果表明,该方法能显著提升噪声关系结构下的预测性能与可解释性。

原文摘要 · Abstract (English)

Graph Neural Networks (GNNs) often struggle with noisy edges. We propose Latent Space Constrained Graph Neural Networks (LSC-GNN) to incorporate external "clean" links and guide embeddings of a noisy target graph. We train two encoders--one on the full graph (target plus external edges) and another on a regularization graph excluding the target's potentially noisy links--then penalize discrepancies between their latent representations. This constraint steers the model away from overfitting spurious edges. Experiments on benchmark datasets show LSC-GNN outperforms standard and noise-resilient GNNs in graphs subjected to moderate noise. We extend LSC-GNN to heterogeneous graphs and validate it on a small protein-metabolite network, where metabolite-protein interactions reduce noise in protein co-occurrence data. Our results highlight LSC-GNN's potential to boost predictive performance and interpretability in settings with noisy relational structures.

图神经网络噪声鲁棒隐空间约束生物网络

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