对比主流MRI腹部分割模型,发现MRSegmentator最准且泛化强。
Benchmarking of Deep Learning Methods for Generic MRI Multi-Organ Abdominal Segmentation
- 用三个开源模型+新合成数据模型对比评估
- 在三大公开数据集上验证,涵盖多厂商、五序列、不同分辨率
- 标注少时可用合成数据训练的ABDSynth替代
深度学习在腹部CT分割中已取得显著进展,但MRI分割因信号变异大、标注成本高而更具挑战。现有方法多基于有限MRI序列训练,泛化性受限。本文系统评估了三种前沿开源模型:MRSegmentator、MRISegmentator-Abdomen和TotalSegmentator MRI。此外,提出并评估基于SynthSeg的ABDSynth模型,仅用广泛可用的CT分割数据训练(无需真实MRI图像)。通过三个未参与训练的公共数据集进行评估,覆盖所有主要厂商、五种MRI序列、多种受试者状态、体素分辨率与视野。结果表明,MRSegmentator性能最佳且最通用;ABDSynth虽精度略低,但训练数据要求极低,适合标注资源有限场景。代码与数据集已开源,便于未来基准测试。
原文摘要 · Abstract (English)
Recent advances in deep learning have led to robust automated tools for segmentation of abdominal computed tomography (CT). Meanwhile, segmentation of magnetic resonance imaging (MRI) is substantially more challenging due to the inherent signal variability and the increased effort required for annotating training datasets. Hence, existing approaches are trained on limited sets of MRI sequences, which might limit their generalizability. To characterize the landscape of MRI abdominal segmentation tools, we present here a comprehensive benchmarking of the three state-of-the-art and open-source models: MRSegmentator, MRISegmentator-Abdomen, and TotalSegmentator MRI. Since these models are trained using labor-intensive manual annotation cycles, we also introduce and evaluate ABDSynth, a SynthSeg-based model purely trained on widely available CT segmentations (no real images). More generally, we assess accuracy and generalizability by leveraging three public datasets (not seen by any of the evaluated methods during their training), which span all major manufacturers, five MRI sequences, as well as a variety of subject conditions, voxel resolutions, and fields-of-view. Our results reveal that MRSegmentator achieves the best performance and is most generalizable. In contrast, ABDSynth yields slightly less accurate results, but its relaxed requirements in training data make it an alternative when the annotation budget is limited. The evaluation code and datasets are given for future benchmarking at https://github.com/deepakri201/AbdoBench, along with inference code and weights for ABDSynth.
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