arXiv:2507.22030eess.IVcs.AI2025-07被引 20

首个将胸部CT报告文本与像素级3D分割关联的数据集,支持医学影像智能分析。

ReXGroundingCT: A 3D Chest CT Dataset for Segmentation of Findings from Free-Text Reports

  • 用大模型提取并标准化土耳其语报告,转为英文后构建结构化标注
  • 包含8028对文本-3D分割,共16301个病灶实体,79%为局灶性异常
  • 提供带解题链的推理数据,适合做医学AI报告生成与定位研究

我们推出了ReXGroundingCT,首个公开可用的将自由文本发现与胸部CT扫描像素级3D分割相链接的数据集。该数据集包含3,142例非增强胸部CT扫描及其来自CT-RATE的标准放射科报告。构建过程遵循三阶段流程:首先使用GPT-4提取并标准化原始土耳其语报告(机器翻译为英文)中的发现、描述符和元数据;其次,使用GPT-4o-mini将每个发现分类至肺部和胸膜异常的层级本体;第三,对所有CT体积进行3D标注:训练集由注册放射科医生质量保证,验证集和测试集由注册放射科医生完全标注。此外,还创建了一个互补的链式思维数据集,利用GPT-4o和器官分割模型提供的定位坐标,提供逐层解剖推理步骤以定位发现。ReXGroundingCT涵盖3,142例非增强CT扫描,包含8,028对文本-3D分割,共16,301个标注实体,其中约79%为局灶性异常,21%为非局灶性异常。数据集包含50例公开验证集和100例私有测试集,均由注册放射科医生标注。该数据集为实现胸部CT中自由文本发现的分割和基于文本的报告生成奠定了基础。私有测试集上的模型性能已通过https://rexrank.ai/ReXGroundingCT公开排行榜展示。数据集可在https://huggingface.co/datasets/rajpurkarlab/ReXGroundingCT获取。

原文摘要 · Abstract (English)

We introduce ReXGroundingCT, the first publicly available dataset linking free-text findings to pixel-level 3D segmentations in chest CT scans. The dataset includes 3,142 non-contrast chest CT scans paired with standardized radiology reports from CT-RATE. Construction followed a structured three-stage pipeline. First, GPT-4 was used to extract and standardize findings, descriptors, and metadata from reports originally written in Turkish and machine-translated into English. Second, GPT-4o-mini categorized each finding into a hierarchical ontology of lung and pleural abnormalities. Third, 3D annotations were produced for all CT volumes: the training set was quality-assured by board-certified radiologists, and the validation and test sets were fully annotated by board-certified radiologists. Additionally, a complementary chain-of-thought dataset was created to provide step-by-step hierarchical anatomical reasoning for localizing findings within the CT volume, using GPT-4o and localization coordinates derived from organ segmentation models. ReXGroundingCT contains 16,301 annotated entities across 8,028 text-to-3D-segmentation pairs, covering diverse radiological patterns from 3,142 non-contrast CT scans. About 79% of findings are focal abnormalities and 21% are non-focal. The dataset includes a public validation set of 50 cases and a private test set of 100 cases, both annotated by board-certified radiologists. The dataset establishes a foundation for enabling free-text finding segmentation and grounded radiology report generation in CT imaging. Model performance on the private test set is hosted on a public leaderboard at https://rexrank.ai/ReXGroundingCT. The dataset is available at https://huggingface.co/datasets/rajpurkarlab/ReXGroundingCT.

医学影像数据集多模态文本到图像

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