用单中心数据训练模型,提升儿童脑瘤分割效率与准确性。
Enhancing efficiency in paediatric brain tumour segmentation using a pathologically diverse single-center clinical dataset
- 基于174例患儿数据,用3D nnU-Net模型实现脑瘤区域自动分割。
- 整体肿瘤和T2高信号区分割效果优秀(平均DSC 0.85),接近人工标注水平。
- 仅用T1、T1-C、T2三序列即可达到接近全序列效果,可简化扫描流程。
儿童脑肿瘤是常见的实体恶性肿瘤,包含多种组织学与分子亚型,影像特征与预后差异大。本研究回顾性分析了174名患儿的单中心临床数据,涵盖高/低级别胶质瘤(HGG/LGG)、髓母细胞瘤(MB)、室管膜瘤及罕见类型,使用T1、T1增强(T1-C)、T2和FLAIR序列,由专家手动标注四类病灶:整体肿瘤(WT)、T2高信号区(T2H)、强化部分(ET)和囊性成分(CC)。采用3D nnU-Net模型进行训练与测试(121/53划分),以骰子相似系数(DSC)评估分割性能,并与人内及人间一致性对比。结果显示,模型对WT和T2H分割表现稳健(平均DSC 0.85),与人工标注变异性相当(平均DSC 0.86);ET分割中等准确(平均DSC 0.75),CC则表现较差。分割精度受肿瘤类型、影像序列组合及位置影响。值得注意的是,仅使用T1、T1-C和T2序列即可获得接近全序列协议的效果。
原文摘要 · Abstract (English)
Background Brain tumours are the most common solid malignancies in children, encompassing diverse histological, molecular subtypes and imaging features and outcomes. Paediatric brain tumours (PBTs), including high- and low-grade gliomas (HGG, LGG), medulloblastomas (MB), ependymomas, and rarer forms, pose diagnostic and therapeutic challenges. Deep learning (DL)-based segmentation offers promising tools for tumour delineation, yet its performance across heterogeneous PBT subtypes and MRI protocols remains uncertain. Methods A retrospective single-centre cohort of 174 paediatric patients with HGG, LGG, medulloblastomas (MB), ependymomas, and other rarer subtypes was used. MRI sequences included T1, T1 post-contrast (T1-C), T2, and FLAIR. Manual annotations were provided for four tumour subregions: whole tumour (WT), T2-hyperintensity (T2H), enhancing tumour (ET), and cystic component (CC). A 3D nnU-Net model was trained and tested (121/53 split), with segmentation performance assessed using the Dice similarity coefficient (DSC) and compared against intra- and inter-rater variability. Results The model achieved robust performance for WT and T2H (mean DSC: 0.85), comparable to human annotator variability (mean DSC: 0.86). ET segmentation was moderately accurate (mean DSC: 0.75), while CC performance was poor. Segmentation accuracy varied by tumour type, MRI sequence combination, and location. Notably, T1, T1-C, and T2 alone produced results nearly equivalent to the full protocol. Conclusions DL is feasible for PBTs, particularly for T2H and WT. Challenges remain for ET and CC segmentation, highlighting the need for further refinement. These findings support the potential for protocol simplification and automation to enhance volumetric assessment and streamline paediatric neuro-oncology workflows.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。