用解剖先验提升3D牙根分割精度,助力正畸治疗评估
GEPAR3D: Geometry Prior-Assisted Learning for 3D Tooth Segmentation
- 融合牙齿形态统计模型作为几何先验,统一检测与分割流程
- 平均Dice达95.0%,根尖分割召回率提升9.5个百分点
- 适合需要高精度牙根分析的临床正畸研究与系统开发
锥形束计算机断层扫描(CBCT)中的牙体分割仍具挑战性,尤其在根尖等细微结构上,这对正畸治疗中根吸收评估至关重要。本文提出GEPAR3D,将实例检测与多类别分割统一为单步流程,以提升根部分割效果。该方法引入牙齿形态的统计形状模型作为几何先验,捕捉解剖上下文与形态一致性,无需强制邻接约束。采用深度分水岭方法,将每颗牙建模为连续的3D能量盆地,编码体素到边界的距离,实现对狭窄复杂根尖的精确分割。模型在单中心公开的CBCT数据上训练,并在两个院内及两个公开医疗中心的外部测试集上评估。GEPAR3D总体分割表现最佳,平均Dice相似系数达95.0%(较第二好方法提升2.8%),所有测试集上召回率提升至95.2%(+9.5%)。定性分析显示根部分割质量显著改善,表明其在更精准根吸收评估和临床决策支持方面具有重要潜力。代码与数据集已开源:https://github.com/tomek1911/GEPAR3D。
原文摘要 · Abstract (English)
Tooth segmentation in Cone-Beam Computed Tomography (CBCT) remains challenging, especially for fine structures like root apices, which is critical for assessing root resorption in orthodontics. We introduce GEPAR3D, a novel approach that unifies instance detection and multi-class segmentation into a single step tailored to improve root segmentation. Our method integrates a Statistical Shape Model of dentition as a geometric prior, capturing anatomical context and morphological consistency without enforcing restrictive adjacency constraints. We leverage a deep watershed method, modeling each tooth as a continuous 3D energy basin encoding voxel distances to boundaries. This instance-aware representation ensures accurate segmentation of narrow, complex root apices. Trained on publicly available CBCT scans from a single center, our method is evaluated on external test sets from two in-house and two public medical centers. GEPAR3D achieves the highest overall segmentation performance, averaging a Dice Similarity Coefficient (DSC) of 95.0% (+2.8% over the second-best method) and increasing recall to 95.2% (+9.5%) across all test sets. Qualitative analyses demonstrated substantial improvements in root segmentation quality, indicating significant potential for more accurate root resorption assessment and enhanced clinical decision-making in orthodontics. We provide the implementation and dataset at https://github.com/tomek1911/GEPAR3D.
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