系统构建脑图数据设计空间,提升神经影像图学习性能
Defining and Benchmarking a Data-Centric Design Space for Brain Graph Construction
- 从信号处理到拓扑提取,分三阶段系统化设计脑图构建流程
- 在HCP1200与ABIDE数据集上,优化配置使分类准确率显著提升
- 适合关注脑图构建细节的神经影像与图学习研究者
从功能磁共振成像(fMRI)数据构建脑图在神经影像图机器学习中至关重要。然而,现有方法多依赖固定流程,忽视了脑图构建中的关键数据决策。本文从数据驱动视角出发,系统定义并评估脑图构建的数据中心设计空间,区别于以往以模型为中心的研究。设计空间分为三个阶段:时间信号处理、拓扑提取和图特征化。我们考察了高振幅BOLD信号滤波、连接性稀疏化与统一策略、替代相关度量,以及包含滞后动态的多视图节点与边特征。在HCP1200和ABIDE数据集上的实验表明,经过精心设计的数据配置能持续提升分类准确率。结果凸显上游数据决策的重要性,强调系统探索数据驱动设计空间的必要性。代码已开源:https://github.com/GeQinwen/DataCentricBrainGraphs。
原文摘要 · Abstract (English)
The construction of brain graphs from functional Magnetic Resonance Imaging (fMRI) data plays a crucial role in enabling graph machine learning for neuroimaging. However, current practices often rely on rigid pipelines that overlook critical data-centric choices in how brain graphs are constructed. In this work, we adopt a Data-Centric AI perspective and systematically define and benchmark a data-centric design space for brain graph construction, constrasting with primarily model-centric prior work. We organize this design space into three stages: temporal signal processing, topology extraction, and graph featurization. Our contributions lie less in novel components and more in evaluating how combinations of existing and modified techniques influence downstream performance. Specifically, we study high-amplitude BOLD signal filtering, sparsification and unification strategies for connectivity, alternative correlation metrics, and multi-view node and edge features, such as incorporating lagged dynamics. Experiments on the HCP1200 and ABIDE datasets show that thoughtful data-centric configurations consistently improve classification accuracy over standard pipelines. These findings highlight the critical role of upstream data decisions and underscore the importance of systematically exploring the data-centric design space for graph-based neuroimaging. Our code is available at https://github.com/GeQinwen/DataCentricBrainGraphs.
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