arXiv:2509.01565q-bio.QMcs.AI2025-09

构建知识图谱整合唐氏综合征多源数据,助力精准研究。

Enabling Down Syndrome Research through a Knowledge Graph-Driven Analytical Framework

  • 以知识图谱融合9项研究数据,整合7148人、37000+生物样本。
  • 构建超160万条语义关联,支持智能查询与假设生成。
  • 适合遗传病、表型分析及跨研究挖掘的研究者使用。

21三体导致唐氏综合征,是一种涉及心脏缺陷、免疫异常、神经发育差异和早发性痴呆风险的复杂遗传病。研究数据分散且异质性高,阻碍了系统性探索。美国国立卫生研究院的INCLUDE计划整合了多阶段参与者级数据,但需先进分析框架才能释放潜力。我们开发了一套知识图谱驱动平台,将9项INCLUDE研究(共7,148名参与者、456种疾病、501个表型、37,000余份生物样本)转化为统一语义基础设施。通过引入Monarch Initiative数据,基因覆盖扩展至4,281个,变异达7,077个。最终知识图谱包含超过160万条语义关联,支持图嵌入与路径推理,可用于人工智能驱动的分析。研究人员可通过SPARQL或自然语言接口查询。该框架将静态数据仓库变为动态发现环境,支持跨研究模式识别、预测建模与基因-表型关系系统探索。

原文摘要 · Abstract (English)

Trisomy 21 results in Down syndrome, a multifaceted genetic disorder with diverse clinical phenotypes, including heart defects, immune dysfunction, neurodevelopmental differences, and early-onset dementia risk. Heterogeneity and fragmented data across studies challenge comprehensive research and translational discovery. The NIH INCLUDE (INvestigation of Co-occurring conditions across the Lifespan to Understand Down syndromE) initiative has assembled harmonized participant-level datasets, yet realizing their potential requires integrative analytical frameworks. We developed a knowledge graph-driven platform transforming nine INCLUDE studies, comprising 7,148 participants, 456 conditions, 501 phenotypes, and over 37,000 biospecimens, into a unified semantic infrastructure. Cross-resource enrichment with Monarch Initiative data expands coverage to 4,281 genes and 7,077 variants. The resulting knowledge graph contains over 1.6 million semantic associations, enabling AI-ready analysis with graph embeddings and path-based reasoning for hypothesis generation. Researchers can query the graph via SPARQL or natural language interfaces. This framework converts static data repositories into dynamic discovery environments, supporting cross-study pattern recognition, predictive modeling, and systematic exploration of genotype-phenotype relationships in Down syndrome.

知识图谱唐氏综合征表型分析生物信息

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