arXiv:2509.06503cs.AIq-bio.QM2025-09被引 58

AI自动生成高质量科研软件,能超越人类专家成果。

An AI system to help scientists write expert-level empirical software

  • 用大模型+树搜索系统化优化代码质量,智能探索解决方案空间。
  • 在生物信息学中发现40种新方法,性能超人类顶尖成果。
  • 适合科研人员快速构建复杂计算工具,加速科学发现进程。

科学发现的循环常因手动编写计算实验软件而受阻。为此,我们提出经验研究助手(ERA),一个利用大语言模型(LLM)与树搜索(TS)的AI系统,旨在生成达到专家水平的科学软件,以最大化质量指标。该系统通过系统性改进质量指标并智能导航庞大解空间,实现对复杂研究思路的探索与整合。在生物信息学任务中,ERA发现了40种新型单细胞数据分析方法,其性能优于公开排行榜上的最优人工方法;在流行病学领域,生成的14个疫情预测模型超越了美国疾控中心(CDC)集成模型及所有其他单模型。此外,ERA还成功开发出用于地理空间分析、斑马鱼神经活动预测和积分数值求解的专家级软件,并设计出一种新颖的时间序列预测规则构造方法。通过在多样化任务中提出并实现创新解决方案,ERA显著推进了科学进步的速度。

原文摘要 · Abstract (English)

The cycle of scientific discovery is frequently bottlenecked by the slow, manual creation of software to support computational experiments\cite{hannay2009how}. To address this, we present Empirical Research Assistance (ERA), an AI system that creates expert-level scientific software whose goal is to maximize a quality metric. The system uses a Large Language Model (LLM) and Tree Search (TS)\cite{silver2016mastering} to systematically improve the quality metric and intelligently navigate the large space of possible solutions. ERA achieves expert-level results when it explores and integrates complex research ideas from external sources. The effectiveness of tree search is demonstrated across a diverse range of tasks. In bioinformatics, ERA discovered 40 novel methods for single-cell data analysis that outperformed the top human-developed methods on a public leaderboard. In epidemiology, ERA generated 14 models that outperformed the CDC ensemble and all other individual models for forecasting COVID-19 hospitalizations. ERA also produced expert-level software for geospatial analysis, neural activity prediction in zebrafish, and numerical solution of integrals, and a novel rule-based construction for time series forecasting. By devising and implementing novel solutions to diverse tasks, ERA represents a significant step towards accelerating scientific progress.

AI编程科研自动化生物信息学树搜索

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