arXiv:2509.21239cs.CVq-bio.QM2025-09被引 7

用熵值自适应融合图神经网络与Mamba,提升病理图像分析性能

SlideMamba: Entropy-Based Adaptive Fusion of GNN and Mamba for Enhanced Representation Learning in Digital Pathology

  • 基于熵值动态分配权重,智能融合局部与全局特征
  • 在基因突变预测任务中PRAUC达0.751,优于现有方法
  • 适合需要精准空间建模的数字病理分析场景

计算病理学依赖从全切片图像(WSIs)中提取有意义的表征以支持临床和生物学任务。本文提出一种通用深度学习框架,将Mamba架构与图神经网络(GNNs)结合,用于增强WSI分析。该方法旨在捕捉局部空间关系与长程上下文依赖,具备灵活的数字病理分析架构。Mamba擅长捕获长程全局依赖,而GNN强调细粒度短程空间交互。为有效融合互补信号,引入基于熵的置信度加权机制,根据局部与全局信息对不同下游任务的重要性,动态调整两分支贡献。实验在预测基因融合与突变状态的任务上验证方法有效性。所提框架SlideMamba在精确率-召回率曲线下面积(PRAUC)达到0.751 ± 0.05,优于MIL(0.491 ± 0.042)、Trans-MIL(0.39 ± 0.017)、仅用Mamba(0.664 ± 0.063)、仅用GNN(0.748 ± 0.091)及先前工作GAT-Mamba(0.703 ± 0.075)。SlideMamba在ROC AUC(0.738 ± 0.055)、灵敏度(0.662 ± 0.083)和特异性(0.725 ± 0.094)上也表现良好。结果表明,集成架构结合熵基自适应融合策略具有显著优势,为计算病理学中的空间解析预测建模提供新可能。

原文摘要 · Abstract (English)

Advances in computational pathology increasingly rely on extracting meaningful representations from Whole Slide Images (WSIs) to support various clinical and biological tasks. In this study, we propose a generalizable deep learning framework that integrates the Mamba architecture with Graph Neural Networks (GNNs) for enhanced WSI analysis. Our method is designed to capture both local spatial relationships and long-range contextual dependencies, offering a flexible architecture for digital pathology analysis. Mamba modules excels in capturing long-range global dependencies, while GNNs emphasize fine-grained short-range spatial interactions. To effectively combine these complementary signals, we introduce an adaptive fusion strategy that uses an entropy-based confidence weighting mechanism. This approach dynamically balances contributions from both branches by assigning higher weight to the branch with more confident (lower-entropy) predictions, depending on the contextual importance of local versus global information for different downstream tasks. We demonstrate the utility of our approach on a representative task: predicting gene fusion and mutation status from WSIs. Our framework, SlideMamba, achieves an area under the precision recall curve (PRAUC) of 0.751 \pm 0.05, outperforming MIL (0.491 \pm 0.042), Trans-MIL (0.39 \pm 0.017), Mamba-only (0.664 \pm 0.063), GNN-only (0.748 \pm 0.091), and a prior similar work GAT-Mamba (0.703 \pm 0.075). SlideMamba also achieves competitive results across ROC AUC (0.738 \pm 0.055), sensitivity (0.662 \pm 0.083), and specificity (0.725 \pm 0.094). These results highlight the strength of the integrated architecture, enhanced by the proposed entropy-based adaptive fusion strategy, and suggest promising potential for application of spatially-resolved predictive modeling tasks in computational pathology.

数字病理图神经网络Mamba自适应融合

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