用少量数据训练的模型可精准检测培养皿霉菌,效率远超传统方法。
Assessing Foundation Models for Mold Colony Detection with Limited Training Data
- 用仅150张标注图微调基础模型,实现接近专家级检测效果。
- 在25张图像下仍能可靠识别约70%样本,性能远超传统模型。
- 适合资源有限但需快速部署的微生物检测系统研发团队。
评估室内空气质量时,定量分析培养皿上霉菌菌落至关重要,高菌落数可能提示健康风险或通风缺陷。传统自动化方法依赖大规模人工标注数据及如YoloV9等模型的长时间训练。为证明大规模标注非必要,我们构建了包含5000张培养皿图像的数据集,含边界框标注,并模拟少样本与低样本场景,提供实例级掩码。我们在任务特定指标上对比三种视觉基础模型与传统基线,结果表明:MaskDINO在仅用150张图像微调后,性能接近经过大量训练的YoloV9;即使仅用25张图像,仍可在约70%样本上保持可靠检测。结果表明,数据高效的基底模型仅需极少数据即可匹配传统方法,支持微生物自动化系统的快速开发与迭代优化,上限性能优于传统模型。
原文摘要 · Abstract (English)
The process of quantifying mold colonies on Petri dish samples is of critical importance for the assessment of indoor air quality, as high colony counts can indicate potential health risks and deficiencies in ventilation systems. Conventionally the automation of such a labor-intensive process, as well as other tasks in microbiology, relies on the manual annotation of large datasets and the subsequent extensive training of models like YoloV9. To demonstrate that exhaustive annotation is not a prerequisite anymore when tackling a new vision task, we compile a representative dataset of 5000 Petri dish images annotated with bounding boxes, simulating both a traditional data collection approach as well as few-shot and low-shot scenarios with well curated subsets with instance level masks. We benchmark three vision foundation models against traditional baselines on task specific metrics, reflecting realistic real-world requirements. Notably, MaskDINO attains near-parity with an extensively trained YoloV9 model while finetuned only on 150 images, retaining competitive performance with as few as 25 images, still being reliable on $\approx$ 70% of the samples. Our results show that data-efficient foundation models can match traditional approaches with only a fraction of the required data, enabling earlier development and faster iterative improvement of automated microbiological systems with a superior upper-bound performance than traditional models would achieve.
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