arXiv:2510.02120cs.NEcs.AI2025-10

利用个体差异提升脑功能连接图提取效果,无需标签也能精准建模

VarCoNet: A variability-aware self-supervised framework for functional connectome extraction from resting-state fMRI

  • 通过对比学习捕捉个体间脑功能差异,生成可迁移的连接图嵌入
  • 在人类连接组计划和自闭症数据集上均超越13种先进方法
  • 适合脑科学、精神疾病诊断及个性化医疗研究者使用

个体间脑功能差异对精准医疗至关重要。本文将这种差异视为有意义信号而非噪声,提出VarCoNet——一种增强型自监督框架,用于从静息态功能性磁共振成像(rs-fMRI)数据中稳健提取功能连接图(FC)。VarCoNet采用自监督对比学习,利用固有的个体间功能差异作为训练信号,构建脑功能编码器,生成可直接用于下游任务的FC嵌入,即使无标注数据亦可适用。其创新性增广策略基于对rs-fMRI信号的分段处理。核心采用1D-CNN-Transformer编码器进行时序建模,并引入鲁棒的贝叶斯超参数优化。在两项下游任务上验证:(i) 使用人类连接组计划(HCP)数据进行个体指纹识别;(ii) 使用ABIDE I和ABIDE II数据集进行自闭症谱系障碍(ASD)分类。采用不同脑区划分方案,在与13种先进深度学习方法的对比中,证明了VarCoNet在性能、鲁棒性、可解释性和泛化能力上的全面优势。

原文摘要 · Abstract (English)

Accounting for inter-individual variability in brain function is key to precision medicine. Here, by considering functional inter-individual variability as meaningful data rather than noise, we introduce VarCoNet, an enhanced self-supervised framework for robust functional connectome (FC) extraction from resting-state fMRI (rs-fMRI) data. VarCoNet employs self-supervised contrastive learning to exploit inherent functional inter-individual variability, serving as a brain function encoder that generates FC embeddings readily applicable to downstream tasks even in the absence of labeled data. Contrastive learning is facilitated by a novel augmentation strategy based on segmenting rs-fMRI signals. At its core, VarCoNet integrates a 1D-CNN-Transformer encoder for advanced time-series processing, enhanced with a robust Bayesian hyperparameter optimization. Our VarCoNet framework is evaluated on two downstream tasks: (i) subject fingerprinting, using rs-fMRI data from the Human Connectome Project, and (ii) autism spectrum disorder (ASD) classification, using rs-fMRI data from the ABIDE I and ABIDE II datasets. Using different brain parcellations, our extensive testing against state-of-the-art methods, including 13 deep learning methods, demonstrates VarCoNet's superiority, robustness, interpretability, and generalizability. Overall, VarCoNet provides a versatile and robust framework for FC analysis in rs-fMRI.

功能连接自监督脑科学医学影像

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