arXiv:2510.09848cs.CV2025-10中稿 · IEEE Transactions …被引 3

通过边界特征提升细胞实例分割精度,解决传统方法丢失几何信息的问题。

Cell Instance Segmentation: The Devil Is in the Boundaries

论文配图:Cell Instance Segmentation: The Devil Is in the Boundaries
图 1 · 摘自论文原文
  • 利用边界特征与标签重构细胞轮廓,改进像素聚类
  • 在六大数据集上优于现有聚类方法,性能接近顶尖水平
  • 适合需要高精度细胞分割的生物医学研究者

当前最先进的细胞实例分割方法基于深度学习语义分割,侧重区分前景与背景像素。为从前景像素中识别细胞实例(如通过像素聚类),多数方法将实例信息分解为像素级目标,例如到前景-背景边界的距离图、以中心点为热源的热扩散图,以及固定角度下中心点到边界的距离(星形多边形)。然而,这些像素级目标可能丢失细胞实例的关键几何属性,如形状、曲率和凸性,这些属性需由一组像素共同表征。为此,我们提出一种新型像素聚类方法 Ceb(Cell boundaries),通过利用细胞边界特征与标签,将前景像素划分为细胞实例。基于语义分割生成的概率图,Ceb 首先使用改进的分水岭算法提取潜在的前景-前景边界。对每个边界候选,通过采样当前前景-前景边界及其邻近背景-前景边界上的像素,构建边界特征表示(称为边界签名)。随后,采用边界分类器根据对应边界签名预测其二值边界标签。最后,基于预测的边界标签,通过合并或分割邻近区域得到细胞实例。在六个数据集上的大量实验表明,Ceb 在语义分割概率图上优于现有像素聚类方法,且性能与当前最优细胞实例分割方法相当。

原文摘要 · Abstract (English)

State-of-the-art (SOTA) methods for cell instance segmentation are based on deep learning (DL) semantic segmentation approaches, focusing on distinguishing foreground pixels from background pixels. In order to identify cell instances from foreground pixels (e.g., pixel clustering), most methods decompose instance information into pixel-wise objectives, such as distances to foreground-background boundaries (distance maps), heat gradients with the center point as heat source (heat diffusion maps), and distances from the center point to foreground-background boundaries with fixed angles (star-shaped polygons). However, pixel-wise objectives may lose significant geometric properties of the cell instances, such as shape, curvature, and convexity, which require a collection of pixels to represent. To address this challenge, we present a novel pixel clustering method, called Ceb (for Cell boundaries), to leverage cell boundary features and labels to divide foreground pixels into cell instances. Starting with probability maps generated from semantic segmentation, Ceb first extracts potential foreground-foreground boundaries with a revised Watershed algorithm. For each boundary candidate, a boundary feature representation (called boundary signature) is constructed by sampling pixels from the current foreground-foreground boundary as well as the neighboring background-foreground boundaries. Next, a boundary classifier is used to predict its binary boundary label based on the corresponding boundary signature. Finally, cell instances are obtained by dividing or merging neighboring regions based on the predicted boundary labels. Extensive experiments on six datasets demonstrate that Ceb outperforms existing pixel clustering methods on semantic segmentation probability maps. Moreover, Ceb achieves highly competitive performance compared to SOTA cell instance segmentation methods.

细胞分割实例分割边界特征聚类优化

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