用AI自动识别血液细胞簇及其类型,准确率超95%
Automatic Classification of Circulating Blood Cell Clusters based on Multi-channel Flow Cytometry Imaging
- 先用YOLOv11区分细胞簇与非簇图像
- 再通过多通道荧光叠加定位簇内细胞类型
- 适合免疫、肿瘤等细胞簇研究者使用
循环血液细胞簇(CCCs)包含红细胞、白细胞和血小板,是血栓、感染和炎症的重要生物标志物。流式细胞术结合荧光染色可分析这些细胞簇的形态和蛋白特征。尽管机器学习已用于单细胞图像自动分析,但针对细胞簇的研究仍不足。与单细胞不同,细胞簇形状不规则、大小不一,且常含多种细胞类型,需多通道染色识别。本研究提出一种新计算框架,采用两步策略:首先微调YOLOv11模型,将图像分为细胞簇与非簇类,性能优于传统CNN和ViT;其次通过叠加细胞簇轮廓与多通道荧光区域,提升在细胞碎片和染色伪影下的识别准确率。该方法在集群分类和表型识别上均达到95%以上准确率。框架整合明场与荧光数据,初步在血细胞上验证,未来可扩展至免疫和肿瘤细胞簇分析,助力多种疾病研究。
原文摘要 · Abstract (English)
Circulating blood cell clusters (CCCs) containing red blood cells (RBCs), white blood cells(WBCs), and platelets are significant biomarkers linked to conditions like thrombosis, infection, and inflammation. Flow cytometry, paired with fluorescence staining, is commonly used to analyze these cell clusters, revealing cell morphology and protein profiles. While computational approaches based on machine learning have advanced the automatic analysis of single-cell flow cytometry images, there is a lack of effort to build tools to automatically analyze images containing CCCs. Unlike single cells, cell clusters often exhibit irregular shapes and sizes. In addition, these cell clusters often consist of heterogeneous cell types, which require multi-channel staining to identify the specific cell types within the clusters. This study introduces a new computational framework for analyzing CCC images and identifying cell types within clusters. Our framework uses a two-step analysis strategy. First, it categorizes images into cell cluster and non-cluster groups by fine-tuning the You Only Look Once(YOLOv11) model, which outperforms traditional convolutional neural networks (CNNs), Vision Transformers (ViT). Then, it identifies cell types by overlaying cluster contours with regions from multi-channel fluorescence stains, enhancing accuracy despite cell debris and staining artifacts. This approach achieved over 95% accuracy in both cluster classification and phenotype identification. In summary, our automated framework effectively analyzes CCC images from flow cytometry, leveraging both bright-field and fluorescence data. Initially tested on blood cells, it holds potential for broader applications, such as analyzing immune and tumor cell clusters, supporting cellular research across various diseases.
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