用生物机制引导的神经网络,从噪声数据中同时估计参数并发现缺失的生物学规律。
CBINNS: Cancer Biology-Informed Neural Network for Unknown Parameter Estimation and Missing Physics Identification
- 融合癌症生物学先验知识的神经网络,约束模型学习方向。
- 在三种非线性肿瘤-免疫模型上,准确估算未知参数并识别缺失项。
- 适用于实验数据稀疏、噪声大的生物系统建模与机制发现。
肿瘤-免疫相互作用在复杂的肿瘤微环境中通常由常微分方程或偏微分方程系统建模。这些模型包含需从有限且嘈杂的实验数据中准确高效估计的未知参数。此外,由于生物系统的复杂性及实验测量限制,对肿瘤-免疫动态的理解不完整,仅能获得部分物理规律,导致方程中存在未知或缺失项。本研究提出一种癌症生物学引导的神经网络(CBINN),用于从稀疏和噪声测量中推断方程中的未知参数并发现缺失的物理规律。我们在三个不同的非线性分室肿瘤-免疫模型上测试了CBINN性能,并评估其在多种合成噪声水平下的鲁棒性。通过利用高度非线性的动态特性,本框架能有效估计未知参数并揭示支配这些生物系统的潜在物理规律或数学结构,即使数据散乱且含有噪声。所选模型代表了肿瘤-免疫分室模型中常见的动态模式,验证了该方法的通用性与有效性。
原文摘要 · Abstract (English)
The dynamics of tumor-immune interactions within a complex tumor microenvironment are typically modeled using a system of ordinary differential equations or partial differential equations. These models introduce some unknown parameters that need to be estimated accurately and efficiently from the limited and noisy experimental data. Moreover, due to the intricate biological complexity and limitations in experimental measurements, tumor-immune dynamics are not fully understood, and therefore, only partial knowledge of the underlying physics may be available, resulting in unknown or missing terms within the system of equations. In this study, we develop a cancer biology-informed neural network model(CBINN) to infer the unknown parameters in the system of equations as well as to discover the missing physics from sparse and noisy measurements. We test the performance of the CBINN model on three distinct nonlinear compartmental tumor-immune models and evaluate its robustness across multiple synthetic noise levels. By harnessing these highly nonlinear dynamics, our CBINN framework effectively estimates the unknown model parameters and uncovers the underlying physical laws or mathematical structures that govern these biological systems, even from scattered and noisy measurements. The models chosen here represent the dynamic patterns commonly observed in compartmental models of tumor-immune interactions, thereby validating the generalizability and efficacy of our methodology.
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