用可靠性度量和数据筛选提升低质量染色体图像分类精度
Precise classification of low quality G-banded Chromosome Images by reliability metrics and data pruning classifier
- 设计可靠性阈值与定制特征,过滤低质图像中的干扰信息
- 在低质量数据库上实现超90%的染色体分类准确率
- 适合资源匮乏地区或低成本病理实验室使用
过去十年间,得益于高分辨率相机和精准的中期分析,染色体分类的准确性显著提升。然而,现有核型分析系统需大量高质量训练数据才能达到理想的每条染色体分类精度,而这一要求在部分偏远病理实验室尚未实现。为防止低成本系统和低质量图像下的误检,本文提出基于可靠性阈值度量和精心设计特征的方法,提升染色体分类精度。所提方法在改进的Alex-Net神经网络、SVM、K近邻及其级联管道上进行了评估,实现了对常见异常和易位染色体超过90%的分类精度。进一步对比了所提出的阈值度量方法,选出最优方案并分析其优势。该方法在极低质量的G显带数据库上取得高精度结果,验证了其在贫困国家及低预算病理实验室中的适用性。
原文摘要 · Abstract (English)
In the last decade, due to high resolution cameras and accurate meta-phase analyzes, the accuracy of chromosome classification has improved substantially. However, current Karyotyping systems demand large number of high quality train data to have an adequately plausible Precision per each chromosome. Such provision of high quality train data with accurate devices are not yet accomplished in some out-reached pathological laboratories. To prevent false positive detections in low-cost systems and low-quality images settings, this paper improves the classification Precision of chromosomes using proposed reliability thresholding metrics and deliberately engineered features. The proposed method has been evaluated using a variation of deep Alex-Net neural network, SVM, K Nearest-Neighbors, and their cascade pipelines to an automated filtering of semi-straight chromosome. The classification results have highly improved over 90% for the chromosomes with more common defections and translocations. Furthermore, a comparative analysis over the proposed thresholding metrics has been conducted and the best metric is bolded with its salient characteristics. The high Precision results provided for a very low-quality G-banding database verifies suitability of the proposed metrics and pruning method for Karyotyping facilities in poor countries and lowbudget pathological laboratories.
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