arXiv:2511.00579cs.LGq-bio.QM2025-11

融合稀疏与非参数方法,自动发现复杂生物系统的动态方程。

Sparse and nonparametric estimation of equations governing dynamical systems with applications to biology

论文配图:Sparse and nonparametric estimation of equations governing dynamical systems with applications to biology
图 1 · 摘自论文原文
  • 结合稀疏参数估计与非参数技术,从数据中学习系统方程。
  • 无需预先知道非线性形式,可识别Sindy无法捕捉的复杂非线性关系。
  • 适用于系统生物学中难以建模的复杂动态过程,如基因调控网络。

数据驱动的模型发现是理解众多科学领域中动力系统行为的强大方法。尤其在系统生物学中,由于系统结构复杂,自下而上的建模常不可行。近年来,稀疏估计技术在系统辨识中备受关注,主要采用参数化范式以最小复杂度高效捕捉系统动态。例如,Sindy算法通过从函数库中筛选少数关键项,成功实现非线性系统的建模。然而,参数化模型在描述某些复杂系统固有的非线性时仍显不足。为解决此问题,本文提出一种新框架,将稀疏参数估计与非参数方法结合,可在不依赖非线性形式先验知识的前提下,捕捉Sindy无法描述的非线性特性。该方法无需扩展函数库即可发现未知函数形式。我们在多个与复杂生物现象相关的实例中验证了该方法的有效性。

原文摘要 · Abstract (English)

Data-driven discovery of model equations is a powerful approach for understanding the behavior of dynamical systems in many scientific fields. In particular, the ability to learn mathematical models from data would benefit systems biology, where the complex nature of these systems often makes a bottom up approach to modeling unfeasible. In recent years, sparse estimation techniques have gained prominence in system identification, primarily using parametric paradigms to efficiently capture system dynamics with minimal model complexity. In particular, the Sindy algorithm has successfully used sparsity to estimate nonlinear systems by extracting from a library of functions only a few key terms needed to capture the dynamics of these systems. However, parametric models often fall short in accurately representing certain nonlinearities inherent in complex systems. To address this limitation, we introduce a novel framework that integrates sparse parametric estimation with nonparametric techniques. It captures nonlinearities that Sindy cannot describe without requiring a priori information about their functional form. That is, without expanding the library of functions to include the one that is trying to be discovered. We illustrate our approach on several examples related to estimation of complex biological phenomena.

系统生物学动态系统稀疏建模非参数方法

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