用100万张脑组织切片训练模型,实现大脑皮层细胞级结构的智能分析。
CytoNet: A Foundation Model for the Human Cerebral Cortex at Cellular Resolution
- 基于皮层内细胞共定位自监督学习,捕捉复杂微结构特征。
- 在2000+切片上实现区域分类、分层分割与微架构量化。
- 适合神经解剖、脑图谱构建及脑结构-功能关联研究者使用。
研究人类大脑皮层的细胞架构对理解从微观到宏观的脑组织结构及其功能至关重要。然而,自动方法在大规模全脑组织切片中识别复杂纹理模式仍面临挑战。本文提出CytoNet,一个在超过4,000个尸检脑组织切片的100万张未标注显微图像块上训练的基础模型,并在另外5个未参与预训练的脑样本的2,000多张切片上进行评估。通过皮层片内的共定位作为自监督信号,CytoNet能够将复杂的细胞模式编码为表达性强且具有解剖学意义的特征表示。该模型支持多种下游应用,包括皮层区域分类、分层分割、微架构变异量化以及皮层亚区的探索性制图。功能分区分析提供了细胞结构与宏观功能组织之间关联的分区依赖性证据。这些结果确立了CytoNet作为可扩展的大脑皮层微结构分析统一框架,可用于检验细胞架构与结构-功能组织之间的联系。
原文摘要 · Abstract (English)
Studying the cellular architecture of the human cerebral cortex is essential for understanding how the brain is organized from the micro to the macro level, and how it functions. However, investigating complex texture patterns in histological images using automatic methods that can be scaled across whole brains remains a challenge. Here we introduce CytoNet, a foundation model trained on 1 million unlabeled microscopic image patches from over 4,000 histological sections from nine postmortem brains, and evaluated on over 2,000 sections from five additional brains excluded from self-supervised pretraining. Using co-localization in the cortical sheet for self-supervision, CytoNet learns to encode complex cellular patterns into expressive and anatomically meaningful feature representations. CytoNet supports multiple downstream applications, including area classification, laminar segmentation, quantification of microarchitectural variation, and exploratory mapping of cortical subdivisions. Functional parcellation analyses provided parcellation-dependent evidence for links between cytoarchitecture and macroscale functional organization. Together, these results establish CytoNet as a unified framework for scalable analysis of cortical microarchitecture and for testing links between cellular architecture and structure-function organization in the human cerebral cortex.
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