arXiv:2511.04803cs.CVcs.AI2025-11中稿 · IEEE BIBM 2025 Wor…

用少量标注数据训练细胞分割模型,还能避免遗忘旧知识。

Data Efficiency and Transfer Robustness in Biomedical Image Segmentation: A Study of Redundancy and Forgetting with Cellpose

  • 用数据压缩法选关键样本,10%数据即可达到饱和性能。
  • 跨领域迁移时旧任务性能下降,重放5%-10%旧数据可恢复。
  • 按领域顺序训练能提升泛化性,减少遗忘,适合多场景应用。

通用生物医学图像分割模型如Cellpose正被广泛应用于不同成像模态和细胞类型。然而,两个关键问题仍缺乏深入研究:(1) 训练数据冗余程度;(2) 跨域迁移对模型记忆的影响。本文以Cellpose为例,系统分析上述问题。首先,提出简单数据量化(DQ)策略构建紧凑且多样化的训练子集。在Cyto数据集上的实验表明,仅需10%数据即可达到性能饱和,揭示了显著的数据冗余,具备极小标注训练潜力。基于MAE嵌入与t-SNE的潜在空间分析证实,DQ选择的图像块比随机采样捕捉到更丰富的特征多样性。其次,通过跨域微调实验发现,从通用到专精领域的迁移会导致源域性能显著下降。我们证明,仅重放5%-10%源数据即可有效恢复源域性能,而全量重放反而阻碍目标适应。此外,训练领域顺序优化有助于提升泛化能力并减少遗忘。研究强调数据驱动设计的重要性,表明高效训练不仅需要紧凑子集,还需具备记忆感知的学习策略与合理的领域排序。代码已开源:https://github.com/MMV-Lab/biomedseg-efficiency。

原文摘要 · Abstract (English)

Generalist biomedical image segmentation models such as Cellpose are increasingly applied across diverse imaging modalities and cell types. However, two critical challenges remain underexplored: (1) the extent of training data redundancy and (2) the impact of cross domain transfer on model retention. In this study, we conduct a systematic empirical analysis of these challenges using Cellpose as a case study. First, to assess data redundancy, we propose a simple dataset quantization (DQ) strategy for constructing compact yet diverse training subsets. Experiments on the Cyto dataset show that image segmentation performance saturates with only 10% of the data, revealing substantial redundancy and potential for training with minimal annotations. Latent space analysis using MAE embeddings and t-SNE confirms that DQ selected patches capture greater feature diversity than random sampling. Second, to examine catastrophic forgetting, we perform cross domain finetuning experiments and observe significant degradation in source domain performance, particularly when adapting from generalist to specialist domains. We demonstrate that selective DQ based replay reintroducing just 5-10% of the source data effectively restores source performance, while full replay can hinder target adaptation. Additionally, we find that training domain sequencing improves generalization and reduces forgetting in multi stage transfer. Our findings highlight the importance of data centric design in biomedical image segmentation and suggest that efficient training requires not only compact subsets but also retention aware learning strategies and informed domain ordering. The code is available at https://github.com/MMV-Lab/biomedseg-efficiency.

图像分割数据效率模型遗忘Cellpose

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