arXiv:2511.07560eess.IVcs.CV2025-11被引 1

用进化算法选病理切片中的关键小图,90%减量仍保准确

EvoPS: Evolutionary Patch Selection for Whole Slide Image Analysis in Computational Pathology

  • 将选图问题转为多目标优化,同时追求少数量和高精度
  • 在4个癌症数据集上减少超90%训练图数,F1分数不降反升
  • 适合需要高效病理分析的医学研究者和临床部署场景

在计算病理学中,全切片图像(WSI)达到吉比特级,需分割为数千个小块。分析这些高维块嵌入计算成本高,且大量无信息块会稀释关键诊断信号。现有方法多依赖随机采样或简单聚类,未能显式平衡所选块数与最终表征精度之间的权衡。为此,我们提出EvoPS(进化块选择),将块选择建模为多目标优化问题,利用进化搜索同时最小化所选块嵌入数量并最大化下游相似性搜索性能,生成帕累托最优解集。我们在四个来自TCGA的重大癌症队列上,使用五种预训练深度学习模型(含监督CNN与大规模自监督基础模型)生成块嵌入进行验证。结果表明,EvoPS可将所需训练块嵌入数量减少超过90%,同时保持甚至优于采用标准提取流程的全部块嵌入基准的分类F1分数。该框架提供了一种稳健、有原则的方法,用于构建高效、准确、可解释的WSI表征,使用户可在计算成本与诊断性能间灵活选择最佳平衡。

原文摘要 · Abstract (English)

In computational pathology, the gigapixel scale of Whole-Slide Images (WSIs) necessitates their division into thousands of smaller patches. Analyzing these high-dimensional patch embeddings is computationally expensive and risks diluting key diagnostic signals with many uninformative patches. Existing patch selection methods often rely on random sampling or simple clustering heuristics and typically fail to explicitly manage the crucial trade-off between the number of selected patches and the accuracy of the resulting slide representation. To address this gap, we propose EvoPS (Evolutionary Patch Selection), a novel framework that formulates patch selection as a multi-objective optimization problem and leverages an evolutionary search to simultaneously minimize the number of selected patch embeddings and maximize the performance of a downstream similarity search task, generating a Pareto front of optimal trade-off solutions. We validated our framework across four major cancer cohorts from The Cancer Genome Atlas (TCGA) using five pretrained deep learning models to generate patch embeddings, including both supervised CNNs and large self-supervised foundation models. The results demonstrate that EvoPS can reduce the required number of training patch embeddings by over 90% while consistently maintaining or even improving the final classification F1-score compared to a baseline that uses all available patches' embeddings selected through a standard extraction pipeline. The EvoPS framework provides a robust and principled method for creating efficient, accurate, and interpretable WSI representations, empowering users to select an optimal balance between computational cost and diagnostic performance.

病理分析进化算法图像压缩AI医疗

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