用拓扑方法分析脑部MRI,精准识别阿尔茨海默病。
3D-TDA -- Topological feature extraction from 3D images for Alzheimer's disease classification
- 通过持久同调提取脑影像拓扑特征,生成特征向量。
- 二分类准确率97.43%,三分类准确率95.47%,优于深度学习模型。
- 无需数据增强,适合小样本,可与传统模型融合使用。
随着阿尔茨海默病疾病修饰疗法获监管机构批准,基于最低成本测量手段实现早期、客观、准确的临床诊断日益紧迫。本研究提出一种基于持久同调的新型特征提取方法,用于分析脑部结构MRI。该方法通过贝蒂函数将拓扑特征转化为强大的特征向量,并结合XGBoost等简单机器学习模型,构建计算高效的分类系统。在ADNI 3D MRI数据集上,10折交叉验证显示,二分类平均准确率达97.43%,敏感度为99.09%;三分类平均准确率为95.47%,敏感度为94.98%。相比多数深度学习模型,本方法无需数据增强或复杂预处理,特别适用于小样本数据。拓扑特征与卷积滤波器提取的特征迥异,提供全新信息维度,具备与现有模型融合潜力。
原文摘要 · Abstract (English)
Now that disease-modifying therapies for Alzheimer disease have been approved by regulatory agencies, the early, objective, and accurate clinical diagnosis of AD based on the lowest-cost measurement modalities possible has become an increasingly urgent need. In this study, we propose a novel feature extraction method using persistent homology to analyze structural MRI of the brain. This approach converts topological features into powerful feature vectors through Betti functions. By integrating these feature vectors with a simple machine learning model like XGBoost, we achieve a computationally efficient machine learning model. Our model outperforms state-of-the-art deep learning models in both binary and three-class classification tasks for ADNI 3D MRI disease diagnosis. Using 10-fold cross-validation, our model achieved an average accuracy of 97.43 percent and sensitivity of 99.09 percent for binary classification. For three-class classification, it achieved an average accuracy of 95.47 percent and sensitivity of 94.98 percent. Unlike many deep learning models, our approach does not require data augmentation or extensive preprocessing, making it particularly suitable for smaller datasets. Topological features differ significantly from those commonly extracted using convolutional filters and other deep learning machinery. Because it provides an entirely different type of information from machine learning models, it has the potential to combine topological features with other models later on.
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