arXiv:2511.13310eess.IVphysics.med-ph2025-11

开源工具PyPeT可自动分析脑部CT/MR灌注数据,生成血流参数图

PyPeT: A Python Perfusion Tool for Automated Quantitative Brain CT and MR Perfusion Analysis

  • 统一框架处理CT和MR灌注数据,模块化设计易扩展
  • 生成CBF/CBV/MTT/TTP/Tmax等5种血流参数图,与商用工具相关性达0.8
  • 代码开源、低计算负担,适合研究者定制化使用

计算机断层扫描灌注(CTP)和磁共振灌注(MRP)广泛用于急性缺血性卒中及其它脑血管病的评估,可生成脑血流动力学定量图。现有商业软件通常昂贵、闭源且难以定制。本文提出PyPeT,一个开源的Python灌注分析工具,可从原始四维灌注数据自动生成脑血流量(CBF)、脑血容量(CBV)、平均通过时间(MTT)、达峰时间(TTP)和最大值时间(Tmax)图。PyPeT采用统一框架支持CTP与MRP处理,强调模块化、低计算开销和详尽的内联文档。其输出可通过详细调试模式逐步可视化验证,且经与三款FDA认证商业工具及一款研究工具的视觉与定量对比,所有比较的均方相似性(SSIM)均接近0.8,表明与标准工具具有良好的稳定相关性。PyPeT代码已公开于GitHub:https://github.com/Marijn311/CT-and-MR-Perfusion-Tool

原文摘要 · Abstract (English)

Computed tomography perfusion (CTP) and magnetic resonance perfusion (MRP) are widely used in acute ischemic stroke assessment and other cerebrovascular conditions to generate quantitative maps of cerebral hemodynamics. While commercial perfusion analysis software exists, it is often costly, closed source, and lacks customizability. This work introduces PyPeT, an openly available Python Perfusion Tool for head CTP and MRP processing. PyPeT is capable of producing cerebral blood flow (CBF), cerebral blood volume (CBV), mean transit time (MTT), time-to-peak (TTP), and time-to-maximum (Tmax) maps from raw four-dimensional perfusion data. PyPeT aims to make perfusion research as accessible and customizable as possible. This is achieved through a unified framework in which both CTP and MRP data can be processed, with a strong focus on modularity, low computational burden, and significant inline documentation. PyPeT's outputs can be validated through an extensive debug mode in which every step of the process is visualized. Additional validation was performed via visual and quantitative comparison with reference perfusion maps generated by three FDA-approved commercial perfusion tools and a research tool. These comparisons show a mean SSIM around 0.8 for all comparisons, indicating a good and stable correlation with FDA-approved tools. The code for PyPeT is openly available at our GitHub https://github.com/Marijn311/CT-and-MR-Perfusion-Tool

灌注成像医学影像Python工具脑卒中

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