用光流快速提取免疫细胞迁移图像兴趣区,大幅压缩数据量。
FlowRoI A Fast Optical Flow Driven Region of Interest Extraction Framework for High-Throughput Image Compression in Immune Cell Migration Analysis
- 基于光流估计动态定位迁移细胞区域
- 压缩效率提升2.0-2.2倍,保真度更高
- 适合高通量细胞成像数据压缩,临床研究可用
免疫细胞自主迁移对功能至关重要,在多种疾病中起关键作用。我们此前提出ComplexEye多镜头显微镜系统,由16个独立校正像差的玻璃镜头组成,可捕捉高分辨率活细胞迁移视频,支持高通量实时分析,具备临床转化潜力。但此类平台生成数据量呈指数级增长,带来存储与传输压力。为此,我们提出FlowRoI——一种基于光流的快速兴趣区(RoI)提取框架,专用于免疫细胞迁移研究中的高通量图像压缩。该方法通过计算连续帧间光流,生成可靠覆盖几乎所有迁移细胞的RoI掩码,并将原始图像与掩码联合使用JPEG2000编码实现兴趣区感知压缩。FlowRoI计算高效,在配备Intel i7-1255U处理器的现代笔记本上平均达30帧/秒吞吐率,运行时间接近标准JPEG2000。在图像质量方面,其细胞区域峰值信噪比(PSNR)更高,在相同PSNR下压缩率提升2.0–2.2倍。
原文摘要 · Abstract (English)
Autonomous migration is essential for the function of immune cells such as neutrophils and plays a pivotal role in diverse diseases. Recently, we introduced ComplexEye, a multi-lens array microscope comprising 16 independent aberration-corrected glass lenses arranged at the pitch of a 96-well plate, capable of capturing high-resolution movies of migrating cells. This architecture enables high-throughput live-cell video microscopy for migration analysis, supporting routine quantification of autonomous motility with strong potential for clinical translation. However, ComplexEye and similar high-throughput imaging platforms generate data at an exponential rate, imposing substantial burdens on storage and transmission. To address this challenge, we present FlowRoI, a fast optical-flow-based region of interest (RoI) extraction framework designed for high-throughput image compression in immune cell migration studies. FlowRoI estimates optical flow between consecutive frames and derives RoI masks that reliably cover nearly all migrating cells. The raw image and its corresponding RoI mask are then jointly encoded using JPEG2000 to enable RoI-aware compression. FlowRoI operates with high computational efficiency, achieving runtimes comparable to standard JPEG2000 and reaching an average throughput of about 30 frames per second on a modern laptop equipped with an Intel i7-1255U CPU. In terms of image quality, FlowRoI yields higher peak signal-to-noise ratio (PSNR) in cellular regions and achieves 2.0-2.2x higher compression rates at matched PSNR compared to standard JPEG2000.
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