arXiv:2511.16548cs.AI2025-11被引 4

用大模型从病历中零样本扩展医学本体,提升研究与临床应用价值。

Utilizing Large Language Models for Zero-Shot Medical Ontology Extension from Clinical Notes

  • 基于大模型零样本提取病历中的医学实体与关系。
  • 在无标注数据下实现高准确率本体扩展,支持大规模应用。
  • 自动去敏保护隐私,适合医疗信息处理场景。

将新医学概念和关系整合到现有本体中,可显著提升其覆盖范围与实用价值,尤其在生物医学研究和临床应用中。临床笔记作为富含患者详细观察的非结构化文档,提供了有价值的上下文信息,是本体扩展的潜在但未被充分利用的来源。尽管如此,直接利用临床笔记进行本体扩展仍基本未被探索。为此,我们提出CLOZE框架,利用大语言模型(LLMs)从临床笔记中自动提取医学实体,并将其整合到层次化医学本体中。通过利用预训练大模型强大的语言理解能力和广泛的生物医学知识,CLOZE能有效识别疾病相关概念并捕捉复杂层级关系。该零样本框架无需额外训练或标注数据,具有成本效益。此外,CLOZE通过自动移除受保护健康信息(PHI)确保患者隐私。实验结果表明,CLOZE提供了一个准确、可扩展且隐私保护的本体扩展框架,具有广泛支持生物医学研究与临床信息学下游应用的潜力。

原文摘要 · Abstract (English)

Integrating novel medical concepts and relationships into existing ontologies can significantly enhance their coverage and utility for both biomedical research and clinical applications. Clinical notes, as unstructured documents rich with detailed patient observations, offer valuable context-specific insights and represent a promising yet underutilized source for ontology extension. Despite this potential, directly leveraging clinical notes for ontology extension remains largely unexplored. To address this gap, we propose CLOZE, a novel framework that uses large language models (LLMs) to automatically extract medical entities from clinical notes and integrate them into hierarchical medical ontologies. By capitalizing on the strong language understanding and extensive biomedical knowledge of pre-trained LLMs, CLOZE effectively identifies disease-related concepts and captures complex hierarchical relationships. The zero-shot framework requires no additional training or labeled data, making it a cost-efficient solution. Furthermore, CLOZE ensures patient privacy through automated removal of protected health information (PHI). Experimental results demonstrate that CLOZE provides an accurate, scalable, and privacy-preserving ontology extension framework, with strong potential to support a wide range of downstream applications in biomedical research and clinical informatics.

医学本体大模型零样本病历挖掘

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