arXiv:2511.21438cs.AIcs.MA2025-11

让医生用聊天方式一键完成药物重定位分析,无需编程。

Conversational No-code, Multi-agentic Disease Module Identification and Drug Repurposing Prediction with ChatDRex

  • 用多智能体系统把生物信息任务拆解,各司其职
  • 基于NeDRex KG实现药物重定位预测,支持自然语言交互
  • 适合临床医生和科研人员快速生成治疗新思路

已批准药物的重定位为传统药物研发提供了一种高效低成本的替代方案。然而,计算预测重定位候选药物极具挑战性,需药理学、医学、生物学和生物信息学等多领域专家协作。现有算法与工具分散且专注单一环节,数据异构且非结构化,难以无缝集成到工作流中。本文提出基于对话的多智能体系统ChatDRex,旨在实现基于网络的药物重定位预测。该系统依托整合型系统医学知识图谱(NeDRex KG),提供自然语言访问其广泛的生物医学知识库,集成网络分析、文献挖掘与药物重定位的生物信息智能体,并配备评估功能一致性的验证智能体。其灵活的多智能体架构可分配查询路由、数据检索、算法执行与结果可视化等任务。专用推理模块保持用户参与,支持幻觉检测。通过让无计算机科学背景的医生与研究人员以自然语言操控复杂分析,ChatDRex推动了生物信息学的普及,助力临床专家生成假说、探索药物重定位机会,加速新型疗法发现,促进个性化医疗与转化研究。ChatDRex 已公开:apps.cosy.bio/chatdrex。

原文摘要 · Abstract (English)

Repurposing approved drugs offers a time-efficient and cost-effective alternative to traditional drug development. However, in silico prediction of repurposing candidates is challenging and requires the effective collaboration of specialists in various fields, including pharmacology, medicine, biology, and bioinformatics. Fragmented, specialized algorithms and tools often address only narrow aspects of the overall problem. Heterogeneous, unstructured data landscapes require the expertise of specialized users. Hence, these data services do not integrate smoothly across workflows. With ChatDRex, we present a conversation-based, multi-agent system that facilitates the execution of complex bioinformatic analyses aiming for network-based drug repurposing prediction. It builds on the integrated systems medicine knowledge graph (NeDRex KG). ChatDRex provides natural language access to its extensive biomedical knowledge base. It integrates bioinformatics agents for network analysis, literature mining, and drug repurposing. These are complemented by agents that evaluate functional coherence for in silico validation. Its flexible multi-agent design assigns specific tasks to specialized agents, including query routing, data retrieval, algorithm execution, and result visualization. A dedicated reasoning module keeps the user in the loop and allows for hallucination detection. By enabling physicians and researchers without computer science expertise to control complex analyses with natural language, ChatDRex democratizes access to bioinformatics as an important resource for drug repurposing. It enables clinical experts to generate hypotheses and explore drug repurposing opportunities, ultimately accelerating the discovery of novel therapies and advancing personalized medicine and translational research. ChatDRex is publicly available at apps.cosy.bio/chatdrex.

药物重定位多智能体自然语言系统医学

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