arXiv:2512.01885cs.CVq-bio.CB2025-12被引 1

用深度学习追踪癌细胞的瞬时荧光信号,识别分裂与死亡事件。

TransientTrack: Advanced Multi-Object Tracking and Classification of Cancer Cells with Transient Fluorescent Signals

  • 基于嵌入向量直接匹配检测框,无需提取特征
  • 准确追踪细胞轨迹并识别分裂与死亡事件
  • 适合单细胞水平药物疗效与耐药机制研究

在时间序列显微视频中追踪细胞是实现单细胞水平细胞群体动态监测的关键技术。现有方法主要针对具有单一恒定荧光信号的视频,难以捕捉细胞死亡等关键事件。本文提出TransientTrack,一种基于深度学习的多通道显微视频追踪框架,可处理随时间波动的瞬时荧光信号,如细胞昼夜节律。通过识别有丝分裂(细胞分裂)和凋亡(细胞死亡)等关键事件,该方法能构建完整轨迹并获取细胞谱系信息。TransientTrack轻量化设计,直接在检测框嵌入向量上进行匹配,无需量化特定追踪特征。其整合了Transformer网络、多阶段匹配策略及卡尔曼滤波插补缺失轨迹段,统一框架在多种条件下表现优异。我们在单细胞水平评估化疗药物疗效的应用中验证了该方法的有效性。该框架可推动癌症细胞动力学的定量研究,深入解析治疗响应与耐药机制。代码开源:https://github.com/bozeklab/TransientTrack。

原文摘要 · Abstract (English)

Tracking cells in time-lapse videos is an essential technique for monitoring cell population dynamics at a single-cell level. Current methods for cell tracking are developed on videos with mostly single, constant signals and do not detect pivotal events such as cell death. Here, we present TransientTrack, a deep learning-based framework for cell tracking in multi-channel microscopy video data with transient fluorescent signals that fluctuate over time following processes such as the circadian rhythm of cells. By identifying key cellular events - mitosis (cell division) and apoptosis (cell death) our method allows us to build complete trajectories, including cell lineage information. TransientTrack is lightweight and performs matching on cell detection embeddings directly, without the need for quantification of tracking-specific cell features. Furthermore, our approach integrates Transformer Networks, multi-stage matching using all detection boxes, and the interpolation of missing tracklets with the Kalman Filter. This unified framework achieves strong performance across diverse conditions, effectively tracking cells and capturing cell division and death. We demonstrate the use of TransientTrack in an analysis of the efficacy of a chemotherapeutic drug at a single-cell level. The proposed framework could further advance quantitative studies of cancer cell dynamics, enabling detailed characterization of treatment response and resistance mechanisms. The code is available at https://github.com/bozeklab/TransientTrack.

细胞追踪荧光信号癌症研究深度学习

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