实现高通量细胞力学表征的全自动全息显微系统
Real-Time Control and Automation Framework for Acousto-Holographic Microscopy
- 集成实时目标检测与多阶段全息对焦,突破噪声干扰
- 50帧/秒采集下无延迟重建,单对象分析仅9.62秒
- 适合生物力学高通量筛选,可直接部署于实验平台
细胞生物学中重复性显微操作耗费大量专家时间并引入人为误差。尽管数字全息显微镜(DHM)提供无标记定量相位成像(QPI),但其固有的噪声和低对比度使自动对焦与目标检测困难。本文设计并验证了一个全自动化闭环DHM系统,用于高通量生物细胞机械特性分析。系统融合自动蛇形扫描、基于YOLO的实时目标检测,以及采用锁页内存与单生产者单消费者队列的高性能多线程软件架构,实现GPU加速重建与50帧/秒数据采集完全并行,无串行开销。关键贡献在于验证了一种鲁棒的多阶段全息对焦策略:采用低通滤波+标准差的指标,在传统方法(如Tenengrad、Laplacian)失效时仍能可靠对焦。系统性能分析显示,2.23秒的对焦耗时为首要吞吐瓶颈,导致每对象分析时间为9.62秒。本工作提供一个完整的自主DHM筛查平台,并提出混合明场成像模态以应对当前瓶颈。
原文摘要 · Abstract (English)
Manual operation of microscopes for repetitive tasks in cell biology is a significant bottleneck, consuming invaluable expert time, and introducing human error. Automation is essential, and while Digital Holographic Microscopy (DHM) offers powerful, label-free quantitative phase imaging (QPI), its inherently noisy and low-contrast holograms make robust autofocus and object detection challenging. We present the design, integration, and validation of a fully automated closed-loop DHM system engineered for high-throughput mechanical characterization of biological cells. The system integrates automated serpentine scanning, real-time YOLO-based object detection, and a high-performance, multi-threaded software architecture using pinned memory and SPSC queues. This design enables the GPU-accelerated reconstruction pipeline to run fully in parallel with the 50 fps data acquisition, adding no sequential overhead. A key contribution is the validation of a robust, multi-stage holographic autofocus strategy; we demonstrate that a selected metric (based on a low-pass filter and standard deviation) provides reliable focusing for noisy holograms where conventional methods (e.g., Tenengrad, Laplacian) fail entirely. Performance analysis of the complete system identifies the 2.23-second autofocus operation-not reconstruction-as the primary throughput bottleneck, resulting in a 9.62-second analysis time per object. This work delivers a complete functional platform for autonomous DHM screening and provides a clear, data-driven path for future optimization, proposing a hybrid brightfield imaging modality to address current bottlenecks.
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