arXiv:2512.14930stat.APcs.AI2025-12

用动态模型提升显微镜成像效率,自动捕捉关键生物事件。

Restless Multi-Process Multi-Armed Bandits with Applications to Self-Driving Microscopies

  • 将每个区域建模为马尔可夫链集合,捕捉细胞异质性。
  • 算法在模拟中减少37%累积遗憾,实验中多捕获93%关键事件。
  • 适合需要高效成像的生物实验与智能显微镜系统设计者。

高内涵筛选显微镜产生大量活细胞影像数据,但其潜力受限于难以确定何时何地最优成像。在数千个动态演变的兴趣区域间平衡采集时间、计算资源和光漂白预算仍是未解难题,且受视场调节和传感器灵敏度限制。现有方法或依赖静态采样,或使用忽略生物过程动态演化的启发式策略,导致效率低下并遗漏关键事件。本文提出非静止多过程多臂赌博机(RMPMAB)框架,将每个实验区域视为一组马尔可夫链的集合,以捕捉细胞周期异步性与药物反应异质性等生物系统固有异质性。基于此,我们推导出聚合过程的瞬态与渐近行为闭式表达,并设计出在成像区域数上具有次线性复杂度的可扩展威特尔指数策略。通过仿真和真实活细胞成像数据集验证,该方法在资源约束下显著提升吞吐量。值得注意的是,其在模拟中比汤姆森采样、贝叶斯UCB、epsilon-Greedy和轮转法减少超过37%的累积遗憾,并在实际成像实验中捕获93%更多生物学相关事件,凸显其在智能显微镜中的变革潜力。该框架不仅提升实验效率,还将随机决策理论与自主显微控制统一,为多学科科学发现提供原理性加速路径。

原文摘要 · Abstract (English)

High-content screening microscopy generates large amounts of live-cell imaging data, yet its potential remains constrained by the inability to determine when and where to image most effectively. Optimally balancing acquisition time, computational capacity, and photobleaching budgets across thousands of dynamically evolving regions of interest remains an open challenge, further complicated by limited field-of-view adjustments and sensor sensitivity. Existing approaches either rely on static sampling or heuristics that neglect the dynamic evolution of biological processes, leading to inefficiencies and missed events. Here, we introduce the restless multi-process multi-armed bandit (RMPMAB), a new decision-theoretic framework in which each experimental region is modeled not as a single process but as an ensemble of Markov chains, thereby capturing the inherent heterogeneity of biological systems such as asynchronous cell cycles and heterogeneous drug responses. Building upon this foundation, we derive closed-form expressions for transient and asymptotic behaviors of aggregated processes, and design scalable Whittle index policies with sub-linear complexity in the number of imaging regions. Through both simulations and a real biological live-cell imaging dataset, we show that our approach achieves substantial improvements in throughput under resource constraints. Notably, our algorithm outperforms Thomson Sampling, Bayesian UCB, epsilon-Greedy, and Round Robin by reducing cumulative regret by more than 37% in simulations and capturing 93% more biologically relevant events in live imaging experiments, underscoring its potential for transformative smart microscopy. Beyond improving experimental efficiency, the RMPMAB framework unifies stochastic decision theory with optimal autonomous microscopy control, offering a principled approach to accelerate discovery across multidisciplinary sciences.

智能显微强化学习生物成像动态优化

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