arXiv:2512.21623cs.AIcs.MA2025-12

用多智能体系统让普通人也能设计新药。

Democratizing Drug Discovery with an Orchestrated, Knowledge-Driven Multi-Agent Team for User-Guided Therapeutic Design

  • 由生物、化学、药理智能体协同,自动完成靶点发现与药物设计。
  • 基于超过1000万条关联知识图谱,精准定位高置信度药物靶点。
  • 适合医药研发人员快速验证构效关系,降低门槛。

治疗药物发现仍面临巨大挑战,受限于专业领域分散以及计算设计与生理验证之间的执行鸿沟。尽管生成式AI前景广阔,但现有模型多为被动助手而非自主执行者。本文提出OrchestRA,一种人机协同的多智能体平台,将生物学、化学与药理学整合为自主发现引擎。不同于静态代码生成器,其智能体可主动执行模拟并推理结果以驱动迭代优化。由协调器管理:生物智能体利用超百万级关联知识图谱进行深度推理,识别高置信度靶点;化学智能体自主探测结构空腔,支持从头设计或药物重定位;药理智能体通过严格的基于生理的药代动力学(PBPK)模拟评估候选药物。该架构建立动态反馈回路,药代动力学与毒性特征可直接触发结构再优化。通过无缝融合自主执行与人工引导,OrchestRA推动药物发现从随机搜索转向可编程、基于证据的工程化范式。

原文摘要 · Abstract (English)

Therapeutic discovery remains a formidable challenge, impeded by the fragmentation of specialized domains and the execution gap between computational design and physiological validation. Although generative AI offers promise, current models often function as passive assistants rather than as autonomous executors. Here, we introduce OrchestRA, a human-in-the-loop multi-agent platform that unifies biology, chemistry, and pharmacology into an autonomous discovery engine. Unlike static code generators, our agents actively execute simulations and reason the results to drive iterative optimization. Governed by an Orchestrator, a Biologist Agent leverages deep reasoning over a massive knowledge graph (>10 million associations) to pinpoint high-confidence targets; a Chemist Agent autonomously detects structural pockets for de novo design or drug repositioning; and a Pharmacologist Agent evaluates candidates via rigorous physiologically based pharmacokinetic (PBPK) simulations. This architecture establishes a dynamic feedback loop where pharmacokinetic and toxicity profiles directly trigger structural reoptimization. By seamlessly integrating autonomous execution with human guidance, OrchestRA democratizes therapeutic design, transforming drug discovery from a stochastic search to a programmable evidence-based engineering discipline.

药物发现多智能体生成AI知识图谱

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