用多视角生成模型提升脑胶质瘤甲基化预测准确率
The Multi-View Paradigm Shift in MRI Radiomics: Predicting MGMT Methylation in Glioblastoma
- 构建基于变分自编码器的多视角表征学习框架,保留不同MRI模态特异性信息
- 在测试集上达到0.77的ROC-AUC,显著优于基线模型(0.54)和调参模型(0.64)
- 适合关注医学影像与分子特征关联的研究者及临床辅助诊断开发者
从医学影像非侵入性推断肿瘤分子特征是放射基因组学的核心目标,尤其在胶质母细胞瘤(GBM)中,O6-甲基鸟嘌呤-DNA甲基转移酶(MGMT)启动子甲基化具有重要预后与治疗意义。尽管基于放射组学的机器学习方法对此任务展现出潜力,但传统的单模态与早期融合方法常受限于高特征冗余及模态特异性信息建模不全。本文提出一种基于变分自编码器(VAE)的多视角潜在表征学习框架,保留各模态放射组学结构的同时,在紧凑的概率潜在空间中实现晚期融合。该方法在强化后T1加权(T1Gd)与液体衰减反转恢复(FLAIR)MRI图像中提取的坏死肿瘤核心区放射组学特征上进行评估。实验结果表明,所提多视角VAE结合随机森林分类器,在测试集上取得0.77的受试者工作特征曲线下面积(AUC,95%置信区间:0.71–0.83),显著优于基线放射组学模型(AUC=0.54)与超参数调优模型(AUC=0.64)。结果表明,多视角概率编码能更有效地整合互补的MRI信息,显著提升MGMT启动子甲基化状态的预测性能。
原文摘要 · Abstract (English)
Non-invasive inference of molecular tumor characteristics from medical imaging is a central goal of radiogenomics, particularly in glioblastoma (GBM), where O6-methylguanine-DNA methyltransferase (MGMT) promoter methylation carries important prognostic and therapeutic significance. Although radiomics-based machine learning methods have shown promise for this task, conventional unimodal and early-fusion approaches are often limited by high feature redundancy and incomplete modeling of modality-specific information. In this work, we introduce a multi-view latent representation learning framework based on variational autoencoders (VAE) that preserves modality-specific radiomic structure while enabling late fusion in a compact probabilistic latent space. The approach is evaluated on radiomic features extracted from the necrotic tumor core in post-contrast T1-weighted (T1Gd) and Fluid-Attenuated Inversion Re-covery (FLAIR) Magnetic Resonance Imaging (MRI). Experimental results demonstrate that the proposed multi-view VAE combined with a random forest classifier achieves a test Area Under the Receiver Operating Characteristic (ROC) Curve (AUC) of 0.77 (95% confidence interval: 0.71-0.83), substantially outperforming both a baseline radiomics model (AUC = 0.54) and a hyperparameter-tuned model (AUC = 0.64). These findings indicate that multi-view probabilistic encoding enables more effective integration of complementary MRI information and significantly improves predictive performance for MGMT promoter methylation status.
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