对比多种生成模型,提升凝聚态系统自由能估算效率与精度
Assessing generative modeling approaches for free energy estimates in condensed matter
- 用生成模型直接学习两态间概率密度变换,跳过中间状态采样
- 连续流和FEAT方法能量评估次数少于传统方法,效率更高
- 适合分子模拟中追求高效高精度自由能计算的研究者
准确估算两态间自由能差是分子模拟中的长期挑战。传统方法需采样多个中间状态以保证相空间重叠,计算成本高。玻尔兹曼生成器及类似生成模型方法通过学习两态间的直接概率密度变换,缓解了这一问题。但何种方法在效率、精度与可扩展性间最优尚不明确。本文对选定的生成模型进行评测,涵盖离散与连续归一化流用于目标自由能微扰,以及结合护送雅扎金斯基等式的FEAT方法,以粗粒度单原子冰和伦纳德-琼斯固体为基准系统。所有模型均获得高精度自由能估计,部分系统所需能量评估次数低于传统方法。连续流与FEAT在能量评估上最高效,离散流则推理成本显著更低。我们公开全部数据与结果,支持未来在凝聚相系统中对自由能估算方法的基准测试。
原文摘要 · Abstract (English)
The accurate estimation of free energy differences between two states is a long-standing challenge in molecular simulations. Traditional approaches generally rely on sampling multiple intermediate states to ensure sufficient overlap in phase space and are, consequently, computationally expensive. Boltzmann Generators and related generative-model-based methods have recently addressed this challenge by learning a direct probability density transform between two states. However, it remains unclear which approach provides the best trade-off between efficiency, accuracy, and scalability. In this work, we review and benchmark selected generative approaches for condensed-matter systems, including discrete and continuous normalizing flows for targeted free energy perturbation and FEAT (Free Energy Estimators with Adaptive Transport) combined with the escorted Jarzynski equality, using coarse-grained monatomic ice and Lennard-Jones solids as benchmark systems. All models yield highly accurate free energy estimates and, depending on the system, may require fewer energy evaluations than traditional methods. Continuous flows and FEAT are most efficient in energy evaluations, whereas discrete flows have substantially lower inference cost. By releasing all data together with our results, we enable future benchmarking of free energy estimation methods in condensed-phase systems.
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