用数学模型生成3D医学影像数据,让分割模型零样本泛化能力大幅提升
Synthetic Volumetric Data Generation Enables Zero-Shot Generalization of Foundation Models in 3D Medical Image Segmentation
- 通过解析建模解剖、对比度等三维变化生成合成数据
- 在11个结构上跨模态提升骰子系数,超基线显著
- 无需真实标注,适合医疗图像零样本分割场景
像Segment Anything Model 2(SAM 2)这样的基础模型在自然图像和视频上表现优异,但在医学数据上因外观统计、成像物理及三维结构差异而表现不佳。为弥合这一差距,我们提出SynthFM-3D,一个解析框架,通过数学建模解剖结构、对比度、边界定义和噪声的三维变异性,生成用于训练可提示分割模型的合成数据,无需真实标注。我们在10,000个SynthFM-3D体积上微调SAM 2,并在五个公开数据集中的三种医学成像模态(CT、MR、超声)上评估了十一种解剖结构。与预训练的SAM 2基线相比,SynthFM-3D训练带来了持续且统计显著的骰子系数提升,证明其在跨模态上的更强零样本泛化能力。与监督训练的SAM-Med3D模型在未见心脏超声数据上的对比中,SynthFM-3D实现了2-3倍更高的骰子系数,确立了解析式3D数据建模作为实现模态无关医学分割的有效路径。
原文摘要 · Abstract (English)
Foundation models such as Segment Anything Model 2 (SAM 2) exhibit strong generalization on natural images and videos but perform poorly on medical data due to differences in appearance statistics, imaging physics, and three-dimensional structure. To address this gap, we introduce SynthFM-3D, an analytical framework that mathematically models 3D variability in anatomy, contrast, boundary definition, and noise to generate synthetic data for training promptable segmentation models without real annotations. We fine-tuned SAM 2 on 10,000 SynthFM-3D volumes and evaluated it on eleven anatomical structures across three medical imaging modalities (CT, MR, ultrasound) from five public datasets. SynthFM-3D training led to consistent and statistically significant Dice score improvements over the pretrained SAM 2 baseline, demonstrating stronger zero-shot generalization across modalities. When compared with the supervised SAM-Med3D model on unseen cardiac ultrasound data, SynthFM-3D achieved 2-3x higher Dice scores, establishing analytical 3D data modeling as an effective pathway to modality-agnostic medical segmentation.
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