LUMOS框架融合数据与物理模型,高效设计满足多重目标的荧光分子。
Multi-objective fluorescent molecule design with a data-physics dual-driven generative framework
- 通过共享潜在表示耦合生成器与预测器,实现从属性到分子的直接逆向设计。
- 在多个基准测试中,荧光性质预测准确率和泛化能力均优于基线模型。
- 适合需要多目标优化的荧光分子新结构设计,尤其适用于药物与材料研发。
设计具有特定光学与理化性质的荧光小分子需在广阔且未充分探索的化学空间中进行多目标、多约束搜索。传统生成-评分-筛选方法因搜索效率低、机器学习预测泛化性不可靠及量子化学计算成本过高而难以适用。本文提出LUMOS,一种数据与物理驱动的荧光分子逆向设计框架。LUMOS通过共享潜在表示耦合生成器与预测器,实现属性到分子的直接设计并提升探索效率。同时,结合神经网络与快速时间依赖密度泛函理论(TD-DFT)计算流程,构建了涵盖速度、精度与泛化性不同权衡的互补预测器,确保在多种场景下可靠预测。此外,集成属性引导扩散模型与多目标进化算法,实现多目标下的全新分子设计与优化。在综合基准测试中,LUMOS在荧光性质预测的准确性、泛化性与物理合理性方面持续优于基线模型,并在骨架级与片段级分子优化中表现更优。进一步通过TD-DFT与分子动力学(MD)模拟验证,表明LUMOS可生成符合多种目标要求的有效荧光团。总体而言,这些结果确立了LUMOS作为通用荧光团逆向设计的数据-物理双驱动框架。
原文摘要 · Abstract (English)
Designing fluorescent small molecules with tailored optical and physicochemical properties requires navigating vast, underexplored chemical space while satisfying multiple objectives and constraints. Conventional generate-score-screen approaches become impractical under such realistic design specifications, owing to their low search efficiency, unreliable generalizability of machine-learning prediction, and the prohibitive cost of quantum chemical calculation. Here we present LUMOS, a data-and-physics driven framework for inverse design of fluorescent molecules. LUMOS couples generator and predictor within a shared latent representation, enabling direct specification-to-molecule design and efficient exploration. Moreover, LUMOS combines neural networks with a fast time-dependent density functional theory (TD-DFT) calculation workflow to build a suite of complementary predictors spanning different trade-offs in speed, accuracy, and generalizability, enabling reliable property prediction across diverse scenarios. Finally, LUMOS employs a property-guided diffusion model integrated with multi-objective evolutionary algorithms, enabling de novo design and molecular optimization under multiple objectives and constraints. Across comprehensive benchmarks, LUMOS consistently outperforms baseline models in terms of accuracy, generalizability and physical plausibility for fluorescence property prediction, and demonstrates superior performance in multi-objective scaffold- and fragment-level molecular optimization. Further validation using TD-DFT and molecular dynamics (MD) simulations demonstrates that LUMOS can generate valid fluorophores that meet various target specifications. Overall, these results establish LUMOS as a data-physics dual-driven framework for general fluorophore inverse design.
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