arXiv:2601.16414cs.LGcs.AI2026-01被引 1

PyHealth 2.0让临床深度学习只需7行代码,大幅降低门槛。

PyHealth 2.0: A Comprehensive Open-Source Toolkit for Accessible and Reproducible Clinical Deep Learning

  • 统一15+数据集、20+任务、25+模型,支持多模态医疗数据
  • 处理速度提升39倍,内存占用降低20倍,可在16GB笔记本运行
  • 开源社区超400人,支持多语言,助力可复现的临床AI研究

临床人工智能研究面临基准复现困难、计算成本高、领域知识门槛高等挑战。为此,我们推出PyHealth 2.0,一个增强版临床深度学习工具包,仅需7行代码即可完成预测建模。其核心贡献包括:(1) 统一整合15+数据集、20+临床任务、25+模型、5+可解释性方法及不确定性量化(含合取预测),支持信号、影像与电子健康记录等多模态数据,并实现5+医学编码标准的自动转换;(2) 以用户友好设计支持多模态数据与多样化算力资源,实现最高39倍加速和20倍内存节省,可从16GB笔记本到生产系统运行;(3) 拥有400+成员的活跃开源社区,通过详尽文档、可复现研究与学术医疗机构及产业伙伴协作,提供多语言支持(RHealth)。PyHealth 2.0为可访问、可复现的医疗AI奠定开源基础。

原文摘要 · Abstract (English)

Difficulty replicating baselines, high computational costs, and required domain expertise create persistent barriers to clinical AI research. To address these challenges, we introduce PyHealth 2.0, an enhanced clinical deep learning toolkit that enables predictive modeling in as few as 7 lines of code. PyHealth 2.0 offers three key contributions: (1) a comprehensive toolkit addressing reproducibility and compatibility challenges by unifying 15+ datasets, 20+ clinical tasks, 25+ models, 5+ interpretability methods, and uncertainty quantification including conformal prediction within a single framework that supports diverse clinical data modalities - signals, imaging, and electronic health records - with translation of 5+ medical coding standards; (2) accessibility-focused design accommodating multimodal data and diverse computational resources with up to 39x faster processing and 20x lower memory usage, enabling work from 16GB laptops to production systems; and (3) an active open-source community of 400+ members lowering domain expertise barriers through extensive documentation, reproducible research contributions, and collaborations with academic health systems and industry partners, including multi-language support via RHealth. PyHealth 2.0 establishes an open-source foundation and community advancing accessible, reproducible healthcare AI. Available at pip install pyhealth.

临床AI开源工具可复现性多模态

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